Literature DB >> 24057358

Handling Arabidopsis plants: growth, preservation of seeds, transformation, and genetic crosses.

Luz Rivero1, Randy Scholl, Nicholas Holomuzki, Deborah Crist, Erich Grotewold, Jelena Brkljacic.   

Abstract

Growing healthy plants is essential for the advancement of Arabidopsis thaliana (Arabidopsis) research. Over the last 20 years, the Arabidopsis Biological Resource Center (ABRC) has collected and developed a series of best-practice protocols, some of which are presented in this chapter. Arabidopsis can be grown in a variety of locations, growth media, and environmental conditions. Most laboratory accessions and their mutant or transgenic derivatives flower after 4-5 weeks and set seeds after 7-8 weeks, under standard growth conditions (soil, long day, 23 ºC). Some mutant genotypes, natural accessions, and Arabidopsis relatives require strict control of growth conditions best provided by growth rooms, chambers, or incubators. Other lines can be grown in less-controlled greenhouse settings. Although the majority of lines can be grown in soil, certain experimental purposes require utilization of sterile solid or liquid growth media. These include the selection of primary transformants, identification of homozygous lethal individuals in a segregating population, or bulking of a large amount of plant material. The importance of controlling, observing, and recording growth conditions is emphasized and appropriate equipment required to perform monitoring of these conditions is listed. Proper conditions for seed harvesting and preservation, as well as seed quality control, are also described. Plant transformation and genetic crosses, two of the methods that revolutionized Arabidopsis genetics, are introduced as well.

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Year:  2014        PMID: 24057358     DOI: 10.1007/978-1-62703-580-4_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  15 in total

1.  Agrobacterium-mediated plant transformation: biology and applications.

Authors:  Hau-Hsuan Hwang; Manda Yu; Erh-Min Lai
Journal:  Arabidopsis Book       Date:  2017-10-20

2.  Imaging Spatial Reorganization of a MAPK Signaling Pathway Using the Tobacco Transient Expression System.

Authors:  Ying Zhang; Juan Dong
Journal:  J Vis Exp       Date:  2016-03-20       Impact factor: 1.355

3.  RNA Stability Measurements Using RT-qPCR in Arabidopsis Seedlings.

Authors:  Tianran Jia; Brandon H Le
Journal:  Bio Protoc       Date:  2020-07-20

4.  Phylogenetic and ion-response analyses reveal a relationship between gene expansion and functional divergence in the Ca2+/cation antiporter family in Angiosperms.

Authors:  Ye Zheng; Lin-Bo Wang; Shu-Feng Sun; Shi-Ying Liu; Ming-Jia Liu; Juan Lin
Journal:  Plant Mol Biol       Date:  2020-10-29       Impact factor: 4.076

5.  Development of an in vitro pre-mRNA splicing assay using plant nuclear extract.

Authors:  Mohammed Albaqami; Anireddy S N Reddy
Journal:  Plant Methods       Date:  2018-01-08       Impact factor: 4.993

6.  Synchronisation of Arabidopsis flowering time and whole-plant senescence in seasonal environments.

Authors:  Matin Miryeganeh; Masaki Yamaguchi; Hiroshi Kudoh
Journal:  Sci Rep       Date:  2018-07-06       Impact factor: 4.379

7.  Stress response to CO2 deprivation by Arabidopsis thaliana in plant cultures.

Authors:  Souvik Banerjee; Oskar Siemianowski; Meiling Liu; Kara R Lind; Xinchun Tian; Dan Nettleton; Ludovico Cademartiri
Journal:  PLoS One       Date:  2019-03-13       Impact factor: 3.240

8.  In Arabidopsis thaliana Cd differentially impacts on hormone genetic pathways in the methylation defective ddc mutant compared to wild type.

Authors:  Marianna Pacenza; Antonella Muto; Adriana Chiappetta; Lorenzo Mariotti; Emanuela Talarico; Piero Picciarelli; Ernesto Picardi; Leonardo Bruno; Maria Beatrice Bitonti
Journal:  Sci Rep       Date:  2021-05-26       Impact factor: 4.379

9.  Standardized Method for High-throughput Sterilization of Arabidopsis Seeds.

Authors:  Benson E Lindsey; Luz Rivero; Chistopher S Calhoun; Erich Grotewold; Jelena Brkljacic
Journal:  J Vis Exp       Date:  2017-10-17       Impact factor: 1.355

10.  New Urea Derivatives Are Effective Anti-senescence Compounds Acting Most Likely via a Cytokinin-Independent Mechanism.

Authors:  Jaroslav Nisler; Marek Zatloukal; Roman Sobotka; Jan Pilný; Barbora Zdvihalová; Ondrej Novák; Miroslav Strnad; Lukáš Spíchal
Journal:  Front Plant Sci       Date:  2018-09-11       Impact factor: 5.753

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