Literature DB >> 24052378

Quantitative measurement of Ca2+ and Zn2+ in mammalian cells using genetically encoded fluorescent biosensors.

J Genevieve Park1, Amy E Palmer.   

Abstract

Genetically encoded, ratiometric, fluorescent biosensors can be used to quantitatively measure intracellular ion concentrations in living cells. We describe important factors to consider when selecting a Ca(2+) or Zn(2+) biosensor, such as the sensor's dissociation constant (K(d')) and its dynamic range. We also discuss the limits of quantitative measurement using these sensors and reasons why a sensor may perform differently in different biological systems or subcellular compartments. We outline protocols for (1) quickly confirming sensor functionality in a new biological system, (2) calibrating a sensor to convert a sensor's FRET ratio to ion concentration, and (3) titrating a sensor in living cells to obtain its K(d') under different experimental conditions.

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Year:  2014        PMID: 24052378      PMCID: PMC4051312          DOI: 10.1007/978-1-62703-622-1_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  20 in total

Review 1.  Creating new fluorescent probes for cell biology.

Authors:  Jin Zhang; Robert E Campbell; Alice Y Ting; Roger Y Tsien
Journal:  Nat Rev Mol Cell Biol       Date:  2002-12       Impact factor: 94.444

2.  Expanded dynamic range of fluorescent indicators for Ca(2+) by circularly permuted yellow fluorescent proteins.

Authors:  Takeharu Nagai; Shuichi Yamada; Takashi Tominaga; Michinori Ichikawa; Atsushi Miyawaki
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-09       Impact factor: 11.205

3.  Spontaneous network activity visualized by ultrasensitive Ca(2+) indicators, yellow Cameleon-Nano.

Authors:  Kazuki Horikawa; Yoshiyuki Yamada; Tomoki Matsuda; Kentarou Kobayashi; Mitsuhiro Hashimoto; Toru Matsu-ura; Atsushi Miyawaki; Takayuki Michikawa; Katsuhiko Mikoshiba; Takeharu Nagai
Journal:  Nat Methods       Date:  2010-08-08       Impact factor: 28.547

4.  Practical aspects of measuring intracellular calcium signals with fluorescent indicators.

Authors:  Joseph P Y Kao; Gong Li; Darryl A Auston
Journal:  Methods Cell Biol       Date:  2010       Impact factor: 1.441

5.  Measuring calcium signaling using genetically targetable fluorescent indicators.

Authors:  Amy E Palmer; Roger Y Tsien
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

6.  Ratiometric detection of Zn(II) using chelating fluorescent protein chimeras.

Authors:  Toon H Evers; Marieke A M Appelhof; Peggy T H M de Graaf-Heuvelmans; E W Meijer; Maarten Merkx
Journal:  J Mol Biol       Date:  2007-09-14       Impact factor: 5.469

7.  Genetically encoded sensors to elucidate spatial distribution of cellular zinc.

Authors:  Philip J Dittmer; Jose G Miranda; Jessica A Gorski; Amy E Palmer
Journal:  J Biol Chem       Date:  2009-04-10       Impact factor: 5.157

8.  Measurement of cytosolic free Ca2+ with quin2.

Authors:  R Tsien; T Pozzan
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

9.  Bcl-2-mediated alterations in endoplasmic reticulum Ca2+ analyzed with an improved genetically encoded fluorescent sensor.

Authors:  Amy E Palmer; Can Jin; John C Reed; Roger Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-07       Impact factor: 11.205

10.  Quantitative comparison of genetically encoded Ca indicators in cortical pyramidal cells and cerebellar Purkinje cells.

Authors:  Yoshiyuki Yamada; Takayuki Michikawa; Mitsuhiro Hashimoto; Kazuki Horikawa; Takeharu Nagai; Atsushi Miyawaki; Michael Häusser; Katsuhiko Mikoshiba
Journal:  Front Cell Neurosci       Date:  2011-09-29       Impact factor: 5.505

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  13 in total

Review 1.  Metal-Dependent DNAzymes for the Quantitative Detection of Metal Ions in Living Cells: Recent Progress, Current Challenges, and Latest Results on FRET Ratiometric Sensors.

Authors:  Kevin Hwang; Quanbing Mou; Ryan J Lake; Mengyi Xiong; Brandalynn Holland; Yi Lu
Journal:  Inorg Chem       Date:  2019-07-31       Impact factor: 5.165

Review 2.  Fluorescent sensors for measuring metal ions in living systems.

Authors:  Kyle P Carter; Alexandra M Young; Amy E Palmer
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

Review 3.  Techniques for measuring cellular zinc.

Authors:  Margaret C Carpenter; Maria N Lo; Amy E Palmer
Journal:  Arch Biochem Biophys       Date:  2016-08-28       Impact factor: 4.013

Review 4.  Advances in imaging of understudied ions in signaling: A focus on magnesium.

Authors:  Tomas S Lazarou; Daniela Buccella
Journal:  Curr Opin Chem Biol       Date:  2020-05-11       Impact factor: 8.822

5.  Organelle-Level Labile Zn2+ Mapping Based on Targetable Fluorescent Sensors.

Authors:  Rong Liu; Toshiyuki Kowada; Yuyin Du; Yuta Amagai; Toshitaka Matsui; Kenji Inaba; Shin Mizukami
Journal:  ACS Sens       Date:  2022-03-03       Impact factor: 7.711

6.  Discovery of a ZIP7 inhibitor from a Notch pathway screen.

Authors:  Erin Nolin; Sara Gans; Luis Llamas; Somnath Bandyopadhyay; Scott M Brittain; Paula Bernasconi-Elias; Kyle P Carter; Joseph J Loureiro; Jason R Thomas; Markus Schirle; Yi Yang; Ning Guo; Guglielmo Roma; Sven Schuierer; Martin Beibel; Alicia Lindeman; Frederic Sigoillot; Amy Chen; Kevin X Xie; Samuel Ho; John Reece-Hoyes; Wilhelm A Weihofen; Kayla Tyskiewicz; Dominic Hoepfner; Richard I McDonald; Nicolette Guthrie; Abhishek Dogra; Haibing Guo; Jian Shao; Jian Ding; Stephen M Canham; Geoff Boynton; Elizabeth L George; Zhao B Kang; Christophe Antczak; Jeffery A Porter; Owen Wallace; John A Tallarico; Amy E Palmer; Jeremy L Jenkins; Rishi K Jain; Simon M Bushell; Christy J Fryer
Journal:  Nat Chem Biol       Date:  2019-01-14       Impact factor: 15.040

Review 7.  Tools and techniques for illuminating the cell biology of zinc.

Authors:  Evan P S Pratt; Leah J Damon; Kelsie J Anson; Amy E Palmer
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2020-09-24       Impact factor: 4.739

Review 8.  Transcription factors and transporters in zinc homeostasis: lessons learned from fungi.

Authors:  David J Eide
Journal:  Crit Rev Biochem Mol Biol       Date:  2020-03-19       Impact factor: 8.250

9.  Systematic Comparison of Vesicular Targeting Signals Leads to the Development of Genetically Encoded Vesicular Fluorescent Zn2+ and pH Sensors.

Authors:  Evan P S Pratt; Kelsie J Anson; Justin K Tapper; David M Simpson; Amy E Palmer
Journal:  ACS Sens       Date:  2020-12-11       Impact factor: 7.711

10.  Characterization of Global Gene Expression, Regulation of Metal Ions, and Infection Outcomes in Immune-Competent 129S6 Mouse Macrophages.

Authors:  Lara N Janiszewski; Michael Minson; Mary A Allen; Robin D Dowell; Amy E Palmer
Journal:  Infect Immun       Date:  2021-08-02       Impact factor: 3.441

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