Literature DB >> 24052257

Replacement of the catalytic nucleophile aspartyl residue of dextran glucosidase by cysteine sulfinate enhances transglycosylation activity.

Wataru Saburi1, Momoko Kobayashi, Haruhide Mori, Masayuki Okuyama, Atsuo Kimura.   

Abstract

Dextran glucosidase from Streptococcus mutans (SmDG) catalyzes the hydrolysis of an α-1,6-glucosidic linkage at the nonreducing end of isomaltooligosaccharides and dextran. This enzyme has an Asp-194 catalytic nucleophile and two catalytically unrelated Cys residues, Cys-129 and Cys-532. Cys-free SmDG was constructed by replacement with Ser (C129S/C532S (2CS), the activity of which was the same as that of the wild type, SmDG). The nucleophile mutant of 2CS was generated by substitution of Asp-194 with Cys (D194C-2CS). The hydrolytic activity of D194C-2CS was 8.1 × 10(-4) % of 2CS. KI-associated oxidation of D194C-2CS increased the activity up to 0.27% of 2CS, which was 330 times higher than D194C-2CS. Peptide-mapping mass analysis of the oxidized D194C-2CS (Ox-D194C-2CS) revealed that Cys-194 was converted into cysteine sulfinate. Ox-D194C-2CS and 2CS shared the same properties (optimum pH, pI, and substrate specificity), whereas Ox-D194C-2CS had much higher transglucosylation activity than 2CS. This is the first study indicating that a more acidic nucleophile (-SOO(-)) enhances transglycosylation. The introduction of cysteine sulfinate as a catalytic nucleophile could be a novel approach to enhance transglycosylation.

Entities:  

Keywords:  Catalytic Nucleophile; Cysteine Sulfinate; Dextran Glucosidase; Enzyme Catalysis; Enzyme Kinetics; Glycoside Hydrolase Family 13; Glycoside Hydrolases; Protein Engineering; Site-specific Mutagenesis; Transglycosylation

Mesh:

Substances:

Year:  2013        PMID: 24052257      PMCID: PMC3814762          DOI: 10.1074/jbc.M113.491449

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  30 in total

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Journal:  Nat Struct Biol       Date:  1999-05

2.  Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins.

Authors:  Mark R Stam; Etienne G J Danchin; Corinne Rancurel; Pedro M Coutinho; Bernard Henrissat
Journal:  Protein Eng Des Sel       Date:  2006-11-02       Impact factor: 1.650

3.  Mechanistic analyses of catalysis in human pancreatic alpha-amylase: detailed kinetic and structural studies of mutants of three conserved carboxylic acids.

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Journal:  Biochemistry       Date:  2002-04-02       Impact factor: 3.162

4.  Structure of the Aspergillus oryzae alpha-amylase complexed with the inhibitor acarbose at 2.0 A resolution.

Authors:  A M Brzozowski; G J Davies
Journal:  Biochemistry       Date:  1997-09-09       Impact factor: 3.162

5.  Effects of both shortening and lengthening the active site nucleophile of Bacillus circulans xylanase on catalytic activity.

Authors:  S L Lawson; W W Wakarchuk; S G Withers
Journal:  Biochemistry       Date:  1996-08-06       Impact factor: 3.162

6.  Restoration of catalytic activity beyond wild-type level in glucoamylase from Aspergillus awamori by oxidation of the Glu400-->Cys catalytic-base mutant to cysteinesulfinic acid.

Authors:  H P Fierobe; E Mirgorodskaya; K A McGuire; P Roepstorff; B Svensson; A J Clarke
Journal:  Biochemistry       Date:  1998-03-17       Impact factor: 3.162

7.  Inactivation of a beta-glucosidase through the accumulation of a stable 2-deoxy-2-fluoro-alpha-D-glucopyranosyl-enzyme intermediate: a detailed investigation.

Authors:  I P Street; J B Kempton; S G Withers
Journal:  Biochemistry       Date:  1992-10-20       Impact factor: 3.162

8.  Trypanosoma cruzi trans-sialidase operates through a covalent sialyl-enzyme intermediate: tyrosine is the catalytic nucleophile.

Authors:  Andrew G Watts; Iben Damager; Maria L Amaya; Alejandro Buschiazzo; Pedro Alzari; Alberto C Frasch; Stephen G Withers
Journal:  J Am Chem Soc       Date:  2003-06-25       Impact factor: 15.419

9.  Unequivocal identification of Asp-214 as the catalytic nucleophile of Saccharomyces cerevisiae alpha-glucosidase using 5-fluoro glycosyl fluorides.

Authors:  J D McCarter; S G Withers
Journal:  J Biol Chem       Date:  1996-03-22       Impact factor: 5.157

10.  Stereochemistry of chitin hydrolysis by a plant chitinase/lysozyme and X-ray structure of a complex with allosamidin: evidence for substrate assisted catalysis.

Authors:  A C Terwisscha van Scheltinga; S Armand; K H Kalk; A Isogai; B Henrissat; B W Dijkstra
Journal:  Biochemistry       Date:  1995-12-05       Impact factor: 3.162

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  1 in total

Review 1.  α-Glucosidases and α-1,4-glucan lyases: structures, functions, and physiological actions.

Authors:  Masayuki Okuyama; Wataru Saburi; Haruhide Mori; Atsuo Kimura
Journal:  Cell Mol Life Sci       Date:  2016-04-30       Impact factor: 9.261

  1 in total

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