Literature DB >> 24050175

Genetic techniques for the archaea.

Joel A Farkas1, Jonathan W Picking, Thomas J Santangelo.   

Abstract

Genetic techniques for the Archaea have undergone a rapid expansion in complexity, resulting in increased exploration of the role of Archaea in the environment and detailed analyses of the molecular physiology and information-processing systems in the third domain of life. Complementary gains in describing the ever-increasing diversity of archaeal organisms have allowed these techniques to be leveraged in new and imaginative ways to elucidate shared and unique aspects of archaeal diversity and metabolism. In this review, we introduce the four archaeal clades for which advanced genetic techniques are available--the methanogens, halophiles, Sulfolobales, and Thermococcales--with the aim of providing an overall profile of the advantages and disadvantages of working within each clade, as essentially all of the genetically accessible archaeal organisms require unique culturing techniques that present real challenges. We discuss the full repertoire of techniques possible within these clades while highlighting the recent advances that have been made by taking advantage of the most prominent techniques and approaches.

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Year:  2013        PMID: 24050175     DOI: 10.1146/annurev-genet-111212-133225

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  26 in total

1.  Induction of a Toxin-Antitoxin Gene Cassette under High Hydrostatic Pressure Enables Markerless Gene Disruption in the Hyperthermophilic Archaeon Pyrococcus yayanosii.

Authors:  Qinghao Song; Zhen Li; Rouke Chen; Xiaopan Ma; Xiang Xiao; Jun Xu
Journal:  Appl Environ Microbiol       Date:  2019-02-06       Impact factor: 4.792

2.  Single-Stranded DNA-Binding Proteins in the Archaea.

Authors:  Najwa Taib; Simonetta Gribaldo; Stuart A MacNeill
Journal:  Methods Mol Biol       Date:  2021

3.  The GAN Exonuclease or the Flap Endonuclease Fen1 and RNase HII Are Necessary for Viability of Thermococcus kodakarensis.

Authors:  Brett W Burkhart; Lubomira Cubonova; Margaret R Heider; Zvi Kelman; John N Reeve; Thomas J Santangelo
Journal:  J Bacteriol       Date:  2017-06-13       Impact factor: 3.490

Review 4.  Unwinding 20 Years of the Archaeal Minichromosome Maintenance Helicase.

Authors:  Lori M Kelman; William B O'Dell; Zvi Kelman
Journal:  J Bacteriol       Date:  2020-02-25       Impact factor: 3.490

5.  The apt/6-Methylpurine Counterselection System and Its Applications in Genetic Studies of the Hyperthermophilic Archaeon Sulfolobus islandicus.

Authors:  Changyi Zhang; Qunxin She; Hongkai Bi; Rachel J Whitaker
Journal:  Appl Environ Microbiol       Date:  2016-05-02       Impact factor: 4.792

6.  Analyses of in vivo interactions between transcription factors and the archaeal RNA polymerase.

Authors:  Julie E Walker; Thomas J Santangelo
Journal:  Methods       Date:  2015-05-29       Impact factor: 3.608

7.  An Archaeal Fluoride-Responsive Riboswitch Provides an Inducible Expression System for Hyperthermophiles.

Authors:  Michael Clayton Speed; Brett W Burkhart; Jonathan W Picking; Thomas J Santangelo
Journal:  Appl Environ Microbiol       Date:  2018-03-19       Impact factor: 4.792

8.  A Highly Thermostable Kanamycin Resistance Marker Expands the Tool Kit for Genetic Manipulation of Caldicellulosiruptor bescii.

Authors:  Gina L Lipscomb; Jonathan M Conway; Sara E Blumer-Schuette; Robert M Kelly; Michael W W Adams
Journal:  Appl Environ Microbiol       Date:  2016-06-30       Impact factor: 4.792

9.  β-alanine biosynthesis in Methanocaldococcus jannaschii.

Authors:  Yu Wang; Huimin Xu; Robert H White
Journal:  J Bacteriol       Date:  2014-06-02       Impact factor: 3.490

10.  Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping.

Authors:  Aldema Sas-Chen; Justin M Thomas; Donna Matzov; Masato Taoka; Kellie D Nance; Ronit Nir; Keri M Bryson; Ran Shachar; Geraldy L S Liman; Brett W Burkhart; Supuni Thalalla Gamage; Yuko Nobe; Chloe A Briney; Michaella J Levy; Ryan T Fuchs; G Brett Robb; Jesse Hartmann; Sunny Sharma; Qishan Lin; Laurence Florens; Michael P Washburn; Toshiaki Isobe; Thomas J Santangelo; Moran Shalev-Benami; Jordan L Meier; Schraga Schwartz
Journal:  Nature       Date:  2020-06-17       Impact factor: 49.962

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