Literature DB >> 24047980

Interrogating biology with force: single molecule high-resolution measurements with optical tweezers.

Marco Capitanio1, Francesco S Pavone.   

Abstract

Single molecule force spectroscopy methods, such as optical and magnetic tweezers and atomic force microscopy, have opened up the possibility to study biological processes regulated by force, dynamics of structural conformations of proteins and nucleic acids, and load-dependent kinetics of molecular interactions. Among the various tools available today, optical tweezers have recently seen great progress in terms of spatial resolution, which now allows the measurement of atomic-scale conformational changes, and temporal resolution, which has reached the limit of the microsecond-scale relaxation times of biological molecules bound to a force probe. Here, we review different strategies and experimental configurations recently developed to apply and measure force using optical tweezers. We present the latest progress that has pushed optical tweezers' spatial and temporal resolution down to today's values, discussing the experimental variables and constraints that are influencing measurement resolution and how these can be optimized depending on the biological molecule under study.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Mesh:

Year:  2013        PMID: 24047980      PMCID: PMC3785866          DOI: 10.1016/j.bpj.2013.08.007

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  96 in total

1.  The motor protein myosin-I produces its working stroke in two steps.

Authors:  C Veigel; L M Coluccio; J D Jontes; J C Sparrow; R A Milligan; J E Molloy
Journal:  Nature       Date:  1999-04-08       Impact factor: 49.962

2.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

Review 3.  Moving into the cell: single-molecule studies of molecular motors in complex environments.

Authors:  Claudia Veigel; Christoph F Schmidt
Journal:  Nat Rev Mol Cell Biol       Date:  2011-02-16       Impact factor: 94.444

4.  PicoNewton-millisecond force steps reveal the transition kinetics and mechanism of the double-stranded DNA elongation.

Authors:  Pasquale Bianco; Lorenzo Bongini; Luca Melli; Mario Dolfi; Vincenzo Lombardi
Journal:  Biophys J       Date:  2011-08-17       Impact factor: 4.033

5.  Dynamic force sensing of filamin revealed in single-molecule experiments.

Authors:  Lorenz Rognoni; Johannes Stigler; Benjamin Pelz; Jari Ylänne; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-13       Impact factor: 11.205

6.  Single-molecule adhesion forces and attachment lifetimes of myosin-I phosphoinositide interactions.

Authors:  Serapion Pyrpassopoulos; Henry Shuman; E Michael Ostap
Journal:  Biophys J       Date:  2010-12-15       Impact factor: 4.033

7.  Single-molecule study of G-quadruplex disruption using dynamic force spectroscopy.

Authors:  Michel de Messieres; Jen-Chien Chang; Barbara Brawn-Cinani; Arthur La Porta
Journal:  Phys Rev Lett       Date:  2012-07-31       Impact factor: 9.161

8.  Stretching single talin rod molecules activates vinculin binding.

Authors:  Armando del Rio; Raul Perez-Jimenez; Ruchuan Liu; Pere Roca-Cusachs; Julio M Fernandez; Michael P Sheetz
Journal:  Science       Date:  2009-01-30       Impact factor: 63.714

9.  Measuring mechanical tension across vinculin reveals regulation of focal adhesion dynamics.

Authors:  Carsten Grashoff; Brenton D Hoffman; Michael D Brenner; Ruobo Zhou; Maddy Parsons; Michael T Yang; Mark A McLean; Stephen G Sligar; Christopher S Chen; Taekjip Ha; Martin A Schwartz
Journal:  Nature       Date:  2010-07-08       Impact factor: 49.962

10.  The myosin motor in muscle generates a smaller and slower working stroke at higher load.

Authors:  Massimo Reconditi; Marco Linari; Leonardo Lucii; Alex Stewart; Yin-Biao Sun; Peter Boesecke; Theyencheri Narayanan; Robert F Fischetti; Tom Irving; Gabriella Piazzesi; Malcom Irving; Vincenzo Lombardi
Journal:  Nature       Date:  2004-04-01       Impact factor: 49.962

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  32 in total

1.  Practical aspects of the cellular force inference toolkit (CellFIT).

Authors:  Jim H Veldhuis; David Mashburn; M Shane Hutson; G Wayne Brodland
Journal:  Methods Cell Biol       Date:  2015-01-08       Impact factor: 1.441

Review 2.  Axial Optical Traps: A New Direction for Optical Tweezers.

Authors:  Samuel Yehoshua; Russell Pollari; Joshua N Milstein
Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

3.  How to Measure Load-Dependent Kinetics of Individual Motor Molecules Without a Force-Clamp.

Authors:  J Sung; K I Mortensen; J A Spudich; H Flyvbjerg
Journal:  Methods Enzymol       Date:  2016-10-31       Impact factor: 1.600

Review 4.  Life under the Microscope: Single-Molecule Fluorescence Highlights the RNA World.

Authors:  Sujay Ray; Julia R Widom; Nils G Walter
Journal:  Chem Rev       Date:  2018-01-24       Impact factor: 60.622

5.  Direct measurement of the mechanism by which magnesium specifically modifies the mechanical properties of DNA.

Authors:  I Montasser; A W Coleman; Y Tauran; G Perret; L Jalabert; D Collard; B J Kim; M C Tarhan
Journal:  Biomicrofluidics       Date:  2017-10-27       Impact factor: 2.800

6.  Quantifying the Precision of Single-Molecule Torque and Twist Measurements Using Allan Variance.

Authors:  Maarten M van Oene; Seungkyu Ha; Tessa Jager; Mina Lee; Francesco Pedaci; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

Review 7.  Directly watching biomolecules in action by high-speed atomic force microscopy.

Authors:  Toshio Ando
Journal:  Biophys Rev       Date:  2017-07-31

8.  PLANT: A Method for Detecting Changes of Slope in Noisy Trajectories.

Authors:  Alberto Sosa-Costa; Izabela K Piechocka; Lucia Gardini; Francesco S Pavone; Marco Capitanio; Maria F Garcia-Parajo; Carlo Manzo
Journal:  Biophys J       Date:  2018-05-08       Impact factor: 4.033

Review 9.  Probing force in living cells with optical tweezers: from single-molecule mechanics to cell mechanotransduction.

Authors:  Claudia Arbore; Laura Perego; Marios Sergides; Marco Capitanio
Journal:  Biophys Rev       Date:  2019-10-14

10.  High-Performance Image-Based Measurements of Biological Forces and Interactions in a Dual Optical Trap.

Authors:  Jessica L Killian; James T Inman; Michelle D Wang
Journal:  ACS Nano       Date:  2018-11-20       Impact factor: 15.881

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