| Literature DB >> 24046699 |
Marisa B Sanders1, John C Farrokh, Joseph Hardie, Benny C Chan.
Abstract
The title compound, C4H6N2O, displays two predominant hydrogen-bonding inter-actions in the crystal structure. The first is between the unprotonated imidazole N atom of one mol-ecule and the hy-droxy H atom of an adjacent mol-ecule. The second is between the hy-droxy O atom of one mol-ecule and the imidazole N-H group of a corresponding mol-ecule. These inter-actions lead to the formation of a two-dimnensional network parallel to (10-1). C-H⋯O inter-actions also occur.Entities:
Year: 2013 PMID: 24046699 PMCID: PMC3770414 DOI: 10.1107/S160053681301636X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H6N2O | |
| Monoclinic, | Mo |
| Cell parameters from 189 reflections | |
| θ = 3.6–28.2° | |
| µ = 0.10 mm−1 | |
| β = 125.249 (1)° | |
| Blocks, colourless | |
| 0.52 × 0.37 × 0.29 mm |
| Bruker APEXII CCD diffractometer | 1158 independent reflections |
| Radiation source: fine-focus sealed tube | 1086 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3333 pixels mm-1 | θmax = 28.6°, θmin = 3.4° |
| ω and φ scans | |
| Absorption correction: multi-scan ( | |
| 5389 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1158 reflections | (Δ/σ)max = 0.002 |
| 65 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of ( |
| O1 | 0.39678 (6) | 0.03753 (10) | 1.06291 (7) | 0.0178 (2) | |
| H1 | 0.4528 | −0.0374 | 1.093 | 0.027* | |
| N1 | 0.43471 (7) | 0.23365 (12) | 0.85046 (9) | 0.0176 (2) | |
| N2 | 0.27914 (7) | 0.41114 (12) | 0.71171 (9) | 0.0178 (2) | |
| H2 | 0.2243 | 0.4731 | 0.6368 | 0.021* | |
| C1 | 0.43706 (9) | 0.22305 (14) | 1.06767 (10) | 0.0189 (2) | |
| H1A | 0.5241 | 0.2245 | 1.1246 | 0.023* | |
| H1B | 0.4118 | 0.3067 | 1.113 | 0.023* | |
| C2 | 0.38850 (8) | 0.29121 (13) | 0.92295 (10) | 0.0160 (2) | |
| C3 | 0.36594 (9) | 0.30971 (14) | 0.72413 (11) | 0.0178 (2) | |
| H3 | 0.3766 | 0.2945 | 0.6512 | 0.021* | |
| C4 | 0.29183 (9) | 0.40012 (14) | 0.83752 (11) | 0.0179 (2) | |
| H4 | 0.2433 | 0.4567 | 0.8605 | 0.021* |
| O1 | 0.0161 (4) | 0.0178 (4) | 0.0184 (4) | 0.0035 (3) | 0.0093 (3) | 0.0032 (3) |
| N1 | 0.0164 (4) | 0.0173 (4) | 0.0191 (4) | 0.0018 (3) | 0.0103 (4) | 0.0007 (3) |
| N2 | 0.0165 (4) | 0.0164 (4) | 0.0178 (4) | 0.0027 (3) | 0.0083 (3) | 0.0024 (3) |
| C1 | 0.0197 (5) | 0.0181 (5) | 0.0154 (5) | 0.0009 (4) | 0.0081 (4) | −0.0012 (4) |
| C2 | 0.0159 (5) | 0.0140 (4) | 0.0169 (5) | −0.0009 (3) | 0.0088 (4) | −0.0016 (3) |
| C3 | 0.0182 (5) | 0.0168 (5) | 0.0193 (5) | 0.0005 (4) | 0.0113 (4) | 0.0005 (4) |
| C4 | 0.0184 (5) | 0.0165 (5) | 0.0196 (5) | 0.0019 (4) | 0.0114 (4) | −0.0001 (4) |
| O1—C1 | 1.4369 (12) | C1—C2 | 1.4917 (13) |
| O1—H1 | 0.84 | C1—H1A | 0.99 |
| N1—C3 | 1.3251 (13) | C1—H1B | 0.99 |
| N1—C2 | 1.3877 (12) | C2—C4 | 1.3674 (14) |
| N2—C3 | 1.3459 (13) | C3—H3 | 0.95 |
| N2—C4 | 1.3738 (13) | C4—H4 | 0.95 |
| N2—H2 | 0.88 | ||
| C1—O1—H1 | H1A—C1—H1B | ||
| C3—N1—C2 | C4—C2—N1 | ||
| C3—N2—C4 | C4—C2—C1 | ||
| C3—N2—H2 | N1—C2—C1 | ||
| C4—N2—H2 | N1—C3—N2 | ||
| O1—C1—C2 | N1—C3—H3 | ||
| O1—C1—H1A | N2—C3—H3 | ||
| C2—C1—H1A | C2—C4—N2 | ||
| O1—C1—H1B | C2—C4—H4 | ||
| C2—C1—H1B | N2—C4—H4 |
| H··· | ||||
| O1—H1···N1i | 0.84 | 1.92 | 2.7563 (13) | 172 |
| N2—H2···O1ii | 0.88 | 1.99 | 2.8315 (11) | 161 |
| C4—H4···O1iii | 0.95 | 2.57 | 3.4574 (17) | 155 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯N1i | 0.84 | 1.92 | 2.7563 (13) | 172 |
| N2—H2⋯O1ii | 0.88 | 1.99 | 2.8315 (11) | 161 |
| C4—H4⋯O1iii | 0.95 | 2.57 | 3.4574 (17) | 155 |
Symmetry codes: (i) ; (ii) ; (iii) .