Literature DB >> 24046699

(1H-Imidazol-4-yl)methanol.

Marisa B Sanders1, John C Farrokh, Joseph Hardie, Benny C Chan.   

Abstract

The title compound, C4H6N2O, displays two predominant hydrogen-bonding inter-actions in the crystal structure. The first is between the unprotonated imidazole N atom of one mol-ecule and the hy-droxy H atom of an adjacent mol-ecule. The second is between the hy-droxy O atom of one mol-ecule and the imidazole N-H group of a corresponding mol-ecule. These inter-actions lead to the formation of a two-dimnensional network parallel to (10-1). C-H⋯O inter-actions also occur.

Entities:  

Year:  2013        PMID: 24046699      PMCID: PMC3770414          DOI: 10.1107/S160053681301636X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on imidazole complex formation, see: Bauman & Wang (1964 ▶); Fan et al. (2000 ▶). For related structures, see: Nyamori et al. (2010 ▶); Albov et al. (2006 ▶). For the use of imidazole-containing compounds in coordination chemistry, see: Huff et al. (1993 ▶); Fujita et al. (1994 ▶). For the use of the title compound in the synthesis of biological compounds, see: Darby et al. (1942 ▶).

Experimental

Crystal data

C4H6N2O M = 98.11 Monoclinic, a = 13.9180 (9) Å b = 7.1980 (5) Å c = 11.6509 (12) Å β = 125.249 (1)° V = 953.20 (13) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.52 × 0.37 × 0.29 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2011 ▶) T min = 0.688, T max = 0.746 5389 measured reflections 1158 independent reflections 1086 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.095 S = 1.07 1158 reflections 65 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2011 ▶); cell refinement: SAINT (Bruker, 2011 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalMaker (CrystalMaker Software, 2009 ▶); software used to prepare material for publication: enCIFer (Allen et al. 2004 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681301636X/fj2622sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301636X/fj2622Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681301636X/fj2622Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H6N2OF(000) = 416
Mr = 98.11Dx = 1.367 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 13.9180 (9) ÅCell parameters from 189 reflections
b = 7.1980 (5) Åθ = 3.6–28.2°
c = 11.6509 (12) ŵ = 0.10 mm1
β = 125.249 (1)°T = 100 K
V = 953.20 (13) Å3Blocks, colourless
Z = 80.52 × 0.37 × 0.29 mm
Bruker APEXII CCD diffractometer1158 independent reflections
Radiation source: fine-focus sealed tube1086 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.015
Detector resolution: 8.3333 pixels mm-1θmax = 28.6°, θmin = 3.4°
ω and φ scansh = −18→18
Absorption correction: multi-scan (SADABS; Bruker, 2011)k = −9→9
Tmin = 0.688, Tmax = 0.746l = −15→15
5389 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0511P)2 + 0.6749P] where P = (Fo2 + 2Fc2)/3
1158 reflections(Δ/σ)max = 0.002
65 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of (F2) against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.39678 (6)0.03753 (10)1.06291 (7)0.0178 (2)
H10.4528−0.03741.0930.027*
N10.43471 (7)0.23365 (12)0.85046 (9)0.0176 (2)
N20.27914 (7)0.41114 (12)0.71171 (9)0.0178 (2)
H20.22430.47310.63680.021*
C10.43706 (9)0.22305 (14)1.06767 (10)0.0189 (2)
H1A0.52410.22451.12460.023*
H1B0.41180.30671.1130.023*
C20.38850 (8)0.29121 (13)0.92295 (10)0.0160 (2)
C30.36594 (9)0.30971 (14)0.72413 (11)0.0178 (2)
H30.37660.29450.65120.021*
C40.29183 (9)0.40012 (14)0.83752 (11)0.0179 (2)
H40.24330.45670.86050.021*
U11U22U33U12U13U23
O10.0161 (4)0.0178 (4)0.0184 (4)0.0035 (3)0.0093 (3)0.0032 (3)
N10.0164 (4)0.0173 (4)0.0191 (4)0.0018 (3)0.0103 (4)0.0007 (3)
N20.0165 (4)0.0164 (4)0.0178 (4)0.0027 (3)0.0083 (3)0.0024 (3)
C10.0197 (5)0.0181 (5)0.0154 (5)0.0009 (4)0.0081 (4)−0.0012 (4)
C20.0159 (5)0.0140 (4)0.0169 (5)−0.0009 (3)0.0088 (4)−0.0016 (3)
C30.0182 (5)0.0168 (5)0.0193 (5)0.0005 (4)0.0113 (4)0.0005 (4)
C40.0184 (5)0.0165 (5)0.0196 (5)0.0019 (4)0.0114 (4)−0.0001 (4)
O1—C11.4369 (12)C1—C21.4917 (13)
O1—H10.84C1—H1A0.99
N1—C31.3251 (13)C1—H1B0.99
N1—C21.3877 (12)C2—C41.3674 (14)
N2—C31.3459 (13)C3—H30.95
N2—C41.3738 (13)C4—H40.95
N2—H20.88
C1—O1—H1H1A—C1—H1B
C3—N1—C2C4—C2—N1
C3—N2—C4C4—C2—C1
C3—N2—H2N1—C2—C1
C4—N2—H2N1—C3—N2
O1—C1—C2N1—C3—H3
O1—C1—H1AN2—C3—H3
C2—C1—H1AC2—C4—N2
O1—C1—H1BC2—C4—H4
C2—C1—H1BN2—C4—H4
D—H···AD—HH···AD···AD—H···A
O1—H1···N1i0.841.922.7563 (13)172
N2—H2···O1ii0.881.992.8315 (11)161
C4—H4···O1iii0.952.573.4574 (17)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N1i 0.841.922.7563 (13)172
N2—H2⋯O1ii 0.881.992.8315 (11)161
C4—H4⋯O1iii 0.952.573.4574 (17)155

Symmetry codes: (i) ; (ii) ; (iii) .

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