Literature DB >> 24046638

(3E,5E)-1-Allyl-3,5-bis(4-meth-oxy-benzyl-idene)-piperidin-4-one.

Abdulrahman I Almansour1, Raju Suresh Kumar, Natarajan Arumugam, R Vishnupriya, J Suresh.   

Abstract

The piperidine ring in the title compound, C24H25NO3, adopts an envelope conformation with the N atom being the flap atom, and each C=C double bond exhibits an E conformation. In the crystal, C-H⋯O hydrogen bonds link the mol-ecules, forming supramolecular layers that stack along the a axis.

Entities:  

Year:  2013        PMID: 24046638      PMCID: PMC3770353          DOI: 10.1107/S1600536813015195

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to piperidine ring systems, see: Guengerich et al. (1973 ▶); Puder et al. (2000 ▶). For the biological importance of the title compound, see: Dimmock, Elias et al. (1999 ▶); Dimmock, Kandepu et al. (1999 ▶). For a similar structure, see: Suresh et al. (2007 ▶). For ring conformation analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C24H25NO3 M = 375.45 Monoclinic, a = 19.2409 (15) Å b = 6.8457 (6) Å c = 15.6393 (13) Å β = 98.255 (2)° V = 2038.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.34 × 0.33 × 0.21 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.973, T max = 0.984 22074 measured reflections 5935 independent reflections 3680 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.169 S = 1.03 5935 reflections 254 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813015195/tk5227sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813015195/tk5227Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813015195/tk5227Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H25NO3F(000) = 800
Mr = 375.45Dx = 1.223 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2000 reflections
a = 19.2409 (15) Åθ = 2–30°
b = 6.8457 (6) ŵ = 0.08 mm1
c = 15.6393 (13) ÅT = 293 K
β = 98.255 (2)°Block, colourless
V = 2038.6 (3) Å30.34 × 0.33 × 0.21 mm
Z = 4
Bruker Kappa APEXII diffractometer5935 independent reflections
Radiation source: fine-focus sealed tube3680 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
Detector resolution: 0 pixels mm-1θmax = 30.0°, θmin = 2.1°
ω and φ scansh = −27→27
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −9→9
Tmin = 0.973, Tmax = 0.984l = −22→22
22074 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.169H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0905P)2 + 0.0856P] where P = (Fo2 + 2Fc2)/3
5935 reflections(Δ/σ)max < 0.001
254 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.54889 (6)0.02740 (19)0.11269 (10)0.0792 (4)
O20.20688 (7)0.68527 (18)0.21213 (10)0.0775 (4)
O3−0.14813 (6)0.6458 (2)0.45644 (8)0.0682 (3)
N10.21732 (5)0.20325 (16)0.35611 (7)0.0421 (3)
C10.43254 (8)0.4039 (2)0.16588 (11)0.0598 (4)
H1A0.43460.53850.17400.072*
C20.49119 (8)0.3075 (3)0.14716 (13)0.0651 (5)
H2A0.53250.37610.14440.078*
C30.48852 (8)0.1090 (2)0.13251 (10)0.0550 (4)
C40.42736 (8)0.0081 (2)0.13796 (10)0.0563 (4)
H4A0.4252−0.12570.12770.068*
C50.36911 (7)0.1063 (2)0.15869 (10)0.0526 (4)
H5A0.32830.03640.16310.063*
C60.37000 (7)0.3065 (2)0.17309 (9)0.0473 (3)
C70.31027 (7)0.4208 (2)0.19275 (9)0.0501 (3)
H7A0.30860.54840.17220.060*
C80.25757 (7)0.3710 (2)0.23565 (9)0.0445 (3)
C90.25089 (7)0.1769 (2)0.27873 (9)0.0449 (3)
H9A0.22300.08890.23900.054*
H9B0.29700.11960.29450.054*
C100.14497 (7)0.2688 (2)0.33075 (9)0.0438 (3)
H10A0.12050.27050.38090.053*
H10B0.12060.17910.28870.053*
C110.14472 (6)0.4704 (2)0.29240 (9)0.0430 (3)
C120.20337 (7)0.5227 (2)0.24397 (10)0.0493 (3)
C130.09767 (7)0.6104 (2)0.30150 (9)0.0456 (3)
H13A0.10670.73000.27700.055*
C140.03457 (7)0.6064 (2)0.34352 (8)0.0448 (3)
C15−0.00436 (7)0.4391 (2)0.35423 (9)0.0485 (3)
H15A0.01090.31960.33560.058*
C16−0.06544 (7)0.4458 (2)0.39197 (9)0.0510 (3)
H16A−0.09060.33200.39830.061*
C17−0.08852 (7)0.6221 (2)0.42007 (9)0.0511 (4)
C18−0.05055 (9)0.7910 (2)0.41030 (11)0.0601 (4)
H18A−0.06560.90990.42970.072*
C190.00918 (8)0.7825 (2)0.37195 (10)0.0550 (4)
H19A0.03350.89730.36470.066*
C200.55156 (11)−0.1755 (3)0.10006 (14)0.0770 (5)
H20A0.5972−0.21100.08710.116*
H20B0.5165−0.21250.05290.116*
H20C0.5429−0.24150.15160.116*
C21−0.18746 (8)0.4758 (3)0.47126 (12)0.0704 (5)
H21A−0.22790.51300.49710.106*
H21B−0.15860.38900.50940.106*
H21C−0.20240.41100.41730.106*
C220.21975 (7)0.0227 (2)0.40710 (10)0.0496 (3)
H22A0.2046−0.08600.36920.060*
H22B0.18750.03350.44910.060*
C230.29171 (9)−0.0170 (3)0.45282 (11)0.0654 (4)
H23A0.31250.07800.49070.079*
C240.32751 (11)−0.1738 (4)0.44379 (16)0.0994 (8)
H24C0.3085−0.27200.40650.119*
H24A0.3723−0.18840.47460.119*
U11U22U33U12U13U23
O10.0652 (7)0.0575 (8)0.1236 (11)0.0088 (6)0.0433 (7)0.0043 (7)
O20.0787 (8)0.0532 (7)0.1092 (10)0.0193 (6)0.0431 (7)0.0334 (7)
O30.0634 (6)0.0774 (9)0.0692 (7)0.0096 (6)0.0277 (6)−0.0027 (6)
N10.0428 (5)0.0382 (6)0.0462 (6)0.0033 (5)0.0093 (4)0.0052 (5)
C10.0638 (9)0.0407 (9)0.0803 (11)−0.0020 (7)0.0286 (8)0.0058 (7)
C20.0574 (9)0.0503 (10)0.0933 (13)−0.0061 (7)0.0308 (8)0.0056 (9)
C30.0543 (8)0.0500 (9)0.0641 (9)0.0048 (7)0.0202 (7)0.0044 (7)
C40.0624 (9)0.0424 (8)0.0669 (9)−0.0012 (7)0.0186 (7)−0.0032 (7)
C50.0501 (7)0.0487 (9)0.0602 (9)−0.0052 (6)0.0125 (6)−0.0022 (7)
C60.0506 (7)0.0458 (8)0.0473 (7)0.0027 (6)0.0132 (6)0.0075 (6)
C70.0537 (7)0.0438 (8)0.0548 (8)0.0043 (6)0.0151 (6)0.0097 (6)
C80.0468 (7)0.0404 (8)0.0469 (7)0.0023 (6)0.0085 (5)0.0032 (6)
C90.0460 (6)0.0404 (7)0.0498 (7)0.0026 (6)0.0123 (5)0.0021 (6)
C100.0398 (6)0.0419 (7)0.0503 (7)0.0016 (5)0.0080 (5)0.0021 (6)
C110.0417 (6)0.0404 (7)0.0461 (7)0.0020 (5)0.0035 (5)0.0012 (6)
C120.0511 (7)0.0435 (8)0.0547 (8)0.0061 (6)0.0122 (6)0.0088 (7)
C130.0456 (6)0.0413 (7)0.0491 (7)0.0031 (6)0.0040 (5)0.0037 (6)
C140.0443 (6)0.0434 (8)0.0454 (7)0.0058 (6)0.0014 (5)0.0006 (6)
C150.0427 (6)0.0442 (8)0.0576 (8)0.0043 (6)0.0034 (6)−0.0060 (6)
C160.0466 (7)0.0492 (9)0.0565 (8)−0.0003 (6)0.0049 (6)−0.0011 (7)
C170.0488 (7)0.0611 (10)0.0437 (7)0.0097 (7)0.0078 (6)−0.0007 (7)
C180.0688 (9)0.0478 (9)0.0662 (10)0.0134 (8)0.0176 (8)−0.0034 (7)
C190.0610 (8)0.0414 (8)0.0643 (9)0.0052 (7)0.0145 (7)0.0023 (7)
C200.0843 (12)0.0616 (12)0.0891 (14)0.0203 (10)0.0259 (10)−0.0022 (10)
C210.0566 (9)0.0971 (15)0.0604 (9)−0.0052 (9)0.0180 (7)−0.0085 (10)
C220.0515 (7)0.0427 (8)0.0566 (8)0.0023 (6)0.0141 (6)0.0092 (6)
C230.0619 (9)0.0723 (12)0.0616 (9)0.0051 (9)0.0075 (7)0.0234 (9)
C240.0765 (12)0.1123 (19)0.1129 (17)0.0407 (13)0.0262 (12)0.0450 (15)
O1—C31.3639 (18)C11—C131.3403 (19)
O1—C201.405 (2)C11—C121.4902 (19)
O2—C121.2253 (18)C13—C141.4614 (19)
O3—C171.3611 (17)C13—H13A0.9300
O3—C211.425 (2)C14—C151.392 (2)
N1—C101.4623 (16)C14—C191.397 (2)
N1—C91.4624 (17)C15—C161.3896 (19)
N1—C221.4681 (18)C15—H15A0.9300
C1—C21.375 (2)C16—C171.380 (2)
C1—C61.394 (2)C16—H16A0.9300
C1—H1A0.9300C17—C181.388 (2)
C2—C31.378 (2)C18—C191.372 (2)
C2—H2A0.9300C18—H18A0.9300
C3—C41.378 (2)C19—H19A0.9300
C4—C51.385 (2)C20—H20A0.9600
C4—H4A0.9300C20—H20B0.9600
C5—C61.389 (2)C20—H20C0.9600
C5—H5A0.9300C21—H21A0.9600
C6—C71.4589 (19)C21—H21B0.9600
C7—C81.3379 (19)C21—H21C0.9600
C7—H7A0.9300C22—C231.489 (2)
C8—C121.4906 (19)C22—H22A0.9700
C8—C91.5033 (19)C22—H22B0.9700
C9—H9A0.9700C23—C241.295 (3)
C9—H9B0.9700C23—H23A0.9300
C10—C111.5040 (19)C24—H24C0.9300
C10—H10A0.9700C24—H24A0.9300
C10—H10B0.9700
C3—O1—C20119.09 (14)C11—C12—C8117.87 (12)
C17—O3—C21118.02 (13)C11—C13—C14130.67 (13)
C10—N1—C9109.25 (11)C11—C13—H13A114.7
C10—N1—C22111.15 (10)C14—C13—H13A114.7
C9—N1—C22111.25 (11)C15—C14—C19116.93 (13)
C2—C1—C6122.13 (15)C15—C14—C13124.46 (13)
C2—C1—H1A118.9C19—C14—C13118.56 (13)
C6—C1—H1A118.9C16—C15—C14121.79 (14)
C1—C2—C3119.80 (14)C16—C15—H15A119.1
C1—C2—H2A120.1C14—C15—H15A119.1
C3—C2—H2A120.1C17—C16—C15119.64 (15)
O1—C3—C4124.88 (15)C17—C16—H16A120.2
O1—C3—C2115.40 (14)C15—C16—H16A120.2
C4—C3—C2119.72 (14)O3—C17—C16124.50 (15)
C3—C4—C5119.90 (15)O3—C17—C18115.81 (14)
C3—C4—H4A120.1C16—C17—C18119.68 (13)
C5—C4—H4A120.1C19—C18—C17120.02 (15)
C4—C5—C6121.71 (13)C19—C18—H18A120.0
C4—C5—H5A119.1C17—C18—H18A120.0
C6—C5—H5A119.1C18—C19—C14121.94 (15)
C5—C6—C1116.72 (13)C18—C19—H19A119.0
C5—C6—C7124.86 (13)C14—C19—H19A119.0
C1—C6—C7118.41 (14)O1—C20—H20A109.5
C8—C7—C6130.23 (14)O1—C20—H20B109.5
C8—C7—H7A114.9H20A—C20—H20B109.5
C6—C7—H7A114.9O1—C20—H20C109.5
C7—C8—C12117.16 (13)H20A—C20—H20C109.5
C7—C8—C9124.73 (12)H20B—C20—H20C109.5
C12—C8—C9118.06 (11)O3—C21—H21A109.5
N1—C9—C8109.79 (11)O3—C21—H21B109.5
N1—C9—H9A109.7H21A—C21—H21B109.5
C8—C9—H9A109.7O3—C21—H21C109.5
N1—C9—H9B109.7H21A—C21—H21C109.5
C8—C9—H9B109.7H21B—C21—H21C109.5
H9A—C9—H9B108.2N1—C22—C23111.66 (12)
N1—C10—C11109.77 (10)N1—C22—H22A109.3
N1—C10—H10A109.7C23—C22—H22A109.3
C11—C10—H10A109.7N1—C22—H22B109.3
N1—C10—H10B109.7C23—C22—H22B109.3
C11—C10—H10B109.7H22A—C22—H22B107.9
H10A—C10—H10B108.2C24—C23—C22124.8 (2)
C13—C11—C12117.03 (13)C24—C23—H23A117.6
C13—C11—C10125.27 (12)C22—C23—H23A117.6
C12—C11—C10117.63 (11)C23—C24—H24C120.0
O2—C12—C11120.98 (13)C23—C24—H24A120.0
O2—C12—C8121.15 (13)H24C—C24—H24A120.0
C6—C1—C2—C31.8 (3)C13—C11—C12—C8178.01 (12)
C20—O1—C3—C4−2.8 (3)C10—C11—C12—C80.94 (19)
C20—O1—C3—C2177.57 (18)C7—C8—C12—O20.6 (2)
C1—C2—C3—O1178.69 (16)C9—C8—C12—O2178.19 (15)
C1—C2—C3—C4−0.9 (3)C7—C8—C12—C11−179.34 (13)
O1—C3—C4—C5179.97 (15)C9—C8—C12—C11−1.73 (19)
C2—C3—C4—C5−0.5 (3)C12—C11—C13—C14179.02 (13)
C3—C4—C5—C61.0 (2)C10—C11—C13—C14−4.2 (2)
C4—C5—C6—C1−0.2 (2)C11—C13—C14—C15−26.2 (2)
C4—C5—C6—C7178.18 (14)C11—C13—C14—C19156.73 (15)
C2—C1—C6—C5−1.3 (2)C19—C14—C15—C16−0.4 (2)
C2—C1—C6—C7−179.72 (16)C13—C14—C15—C16−177.60 (12)
C5—C6—C7—C831.9 (2)C14—C15—C16—C17−0.2 (2)
C1—C6—C7—C8−149.75 (16)C21—O3—C17—C163.8 (2)
C6—C7—C8—C12−179.27 (14)C21—O3—C17—C18−177.41 (14)
C6—C7—C8—C93.3 (2)C15—C16—C17—O3178.79 (13)
C10—N1—C9—C865.73 (14)C15—C16—C17—C180.1 (2)
C22—N1—C9—C8−171.19 (11)O3—C17—C18—C19−178.09 (14)
C7—C8—C9—N1146.84 (14)C16—C17—C18—C190.8 (2)
C12—C8—C9—N1−30.56 (17)C17—C18—C19—C14−1.5 (3)
C9—N1—C10—C11−66.65 (14)C15—C14—C19—C181.3 (2)
C22—N1—C10—C11170.21 (11)C13—C14—C19—C18178.60 (14)
N1—C10—C11—C13−144.68 (13)C10—N1—C22—C23−164.76 (13)
N1—C10—C11—C1232.13 (17)C9—N1—C22—C2373.26 (16)
C13—C11—C12—O2−1.9 (2)N1—C22—C23—C24−122.02 (19)
C10—C11—C12—O2−178.98 (15)
D—H···AD—HH···AD···AD—H···A
C10—H10A···O3i0.972.593.3710 (18)138
C21—H21C···O2ii0.962.543.466 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H10A⋯O3i 0.972.593.3710 (18)138
C21—H21C⋯O2ii 0.962.543.466 (2)163

Symmetry codes: (i) ; (ii) .

  6 in total

Review 1.  Bioactivities of chalcones.

Authors:  J R Dimmock; D W Elias; M A Beazely; N M Kandepu
Journal:  Curr Med Chem       Date:  1999-12       Impact factor: 4.530

2.  (R)-3,5-Bis[(E)-benzylidene]-1-(1-phenylethyl)piperidin-4-one, 3,5-bis[(E)-4-chlorobenzylidene]-1-[(R)-1-phenylethyl]piperidin-4-one and 3,5-bis[(E)-2-chlorobenzylidene]-1-[(R)-1-phenylethyl]piperidin-4-one.

Authors:  J Suresh; R Suresh Kumar; S Perumal; S Natarajan
Journal:  Acta Crystallogr C       Date:  2007-04-28       Impact factor: 1.172

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Conformational and quantitative structure-activity relationship study of cytotoxic 2-arylidenebenzocycloalkanones.

Authors:  J R Dimmock; N M Kandepu; A J Nazarali; T P Kowalchuk; N Motaganahalli; J W Quail; P A Mykytiuk; G F Audette; L Prasad; P Perjési; T M Allen; C L Santos; J Szydlowski; E De Clercq; J Balzarini
Journal:  J Med Chem       Date:  1999-04-22       Impact factor: 7.446

5.  Streptazones A, B(1), B(2), C, and D: new piperidine alkaloids from streptomycetes.

Authors:  C Puder; P Krastel; A Zeeck
Journal:  J Nat Prod       Date:  2000-09       Impact factor: 4.050

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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