Literature DB >> 24037656

Bacterial diversity and composition of an alkaline uranium mine tailings-water interface.

Nurul H Khan1, Viorica F Bondici, Prabhakara G Medihala, John R Lawrence, Gideon M Wolfaardt, Jeff Warner, Darren R Korber.   

Abstract

The microbial diversity and biogeochemical potential associated with a northern Saskatchewan uranium mine water-tailings interface was examined using culture-dependent and -independent techniques. Morphologically-distinct colonies from uranium mine water-tailings and a reference lake (MC) obtained using selective and non-selective media were selected for 16S rRNA gene sequencing and identification, revealing that culturable organisms from the uranium tailings interface were dominated by Firmicutes and Betaproteobacteria; whereas, MC organisms mainly consisted of Bacteroidetes and Gammaproteobacteria. Ion Torrent (IT) 16S rRNA metagenomic analysis carried out on extracted DNA from tailings and MC interfaces demonstrated the dominance of Firmicutes in both of the systems. Overall, the tailings-water interface environment harbored a distinct bacterial community relative to the MC, reflective of the ambient conditions (i.e., total dissolved solids, pH, salinity, conductivity, heavy metals) dominating the uranium tailings system. Significant correlations among the physicochemical data and the major bacterial groups present in the tailings and MC were also observed. Presence of sulfate reducing bacteria demonstrated by culture-dependent analyses and the dominance of Desulfosporosinus spp. indicated by Ion Torrent analyses within the tailings-water interface suggests the existence of anaerobic microenvironments along with the potential for reductive metabolic processes.

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Year:  2013        PMID: 24037656     DOI: 10.1007/s12275-013-3075-z

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  31 in total

1.  Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil.

Authors:  Richard J Ellis; Philip Morgan; Andrew J Weightman; John C Fry
Journal:  Appl Environ Microbiol       Date:  2003-06       Impact factor: 4.792

2.  Bacterial diversity in water samples from uranium wastes as demonstrated by 16S rDNA and ribosomal intergenic spacer amplification retrievals.

Authors:  Galina Radeva; Sonja Selenska-Pobell
Journal:  Can J Microbiol       Date:  2005-11       Impact factor: 2.419

3.  Isolation of bacteria from remote high altitude Andean lakes able to grow in the presence of antibiotics.

Authors:  Julián R Dib; Annika Weiss; Anna Neumann; Omar Ordoñez; María C Estévez; Maria E Farías
Journal:  Recent Pat Antiinfect Drug Discov       Date:  2009-01

4.  Toxicity of uranium mine receiving waters to early life stage fathead minnows (Pimephales promelas) in the laboratory.

Authors:  G G Pyle; S M Swanson; D M Lehmkuhl
Journal:  Environ Pollut       Date:  2002       Impact factor: 8.071

5.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

6.  Microbial communities in low permeability, high pH uranium mine tailings: characterization and potential effects.

Authors:  V F Bondici; J R Lawrence; N H Khan; J E Hill; E Yergeau; G M Wolfaardt; J Warner; D R Korber
Journal:  J Appl Microbiol       Date:  2013-03-19       Impact factor: 3.772

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  Molecular analysis of bacterial communities in uranium ores and surrounding soils from Banduhurang open cast uranium mine, India: A comparative study.

Authors:  Ekramul Islam; Paltu K Dhal; Sufia K Kazy; Pinaki Sar
Journal:  J Environ Sci Health A Tox Hazard Subst Environ Eng       Date:  2011       Impact factor: 2.269

9.  Reclassification of Desulfotomaculum auripigmentum as Desulfosporosinus auripigmenti corrig., comb. nov.

Authors:  Erko Stackebrandt; Peter Schumann; Esther Schüler; Hans Hippe
Journal:  Int J Syst Evol Microbiol       Date:  2003-09       Impact factor: 2.747

10.  Alkalimonas amylolytica gen. nov., sp. nov., and Alkalimonas delamerensis gen. nov., sp. nov., novel alkaliphilic bacteria from soda lakes in China and East Africa.

Authors:  Yanhe Ma; Yanfen Xue; William D Grant; Nadine C Collins; Andrew W Duckworth; Robert P Van Steenbergen; Brian E Jones
Journal:  Extremophiles       Date:  2004-02-21       Impact factor: 2.395

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