Literature DB >> 24036937

Sandwich assay for mixed-sequence recognition of double-stranded DNA: invader-based detection of targets specific to foodborne pathogens.

Benjamin Denn1, Saswata Karmakar, Dale C Guenther, Patrick J Hrdlicka.   

Abstract

A 96-well plate sandwich assay based on Invader capture/signalling probes is used to recognize 28-mer mixed-sequence dsDNA targets specific to Salmonella enterica, Campylobacter jejuni, Escherichia coli. Targets are detected down to 20-55 pM concentration with excellent binding specificity.

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Year:  2013        PMID： 24036937      PMCID： PMC4013274          DOI： 10.1039/c3cc45705b

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  25 in total

1.  Nucleic acid approaches for detection and identification of biological warfare and infectious disease agents.

Authors:  Dmitri Ivnitski; Daniel J O'Neil; Anthony Gattuso; Roger Schlicht; Michael Calidonna; Rodney Fisher
Journal:  Biotechniques       Date:  2003-10       Impact factor: 1.993

Review 2.  Electrochemical DNA sensors.

Authors:  T Gregory Drummond; Michael G Hill; Jacqueline K Barton
Journal:  Nat Biotechnol       Date:  2003-10       Impact factor: 54.908

3.  Fluorescence based strategies for genetic analysis.

Authors:  Rohan T Ranasinghe; Tom Brown
Journal:  Chem Commun (Camb)       Date:  2005-09-30       Impact factor: 6.222

4.  Colorimetric detection of anthrax DNA with a Peptide nucleic acid sandwich-hybridization assay.

Authors:  Ning Zhang; Daniel H Appella
Journal:  J Am Chem Soc       Date:  2007-06-15       Impact factor: 15.419

5.  LNA functionalized gold nanoparticles as probes for double stranded DNA through triplex formation.

Authors:  Fiona McKenzie; Karen Faulds; Duncan Graham
Journal:  Chem Commun (Camb)       Date:  2008-03-20       Impact factor: 6.222

6.  Ultrasensitive fluorescence-based methods for nucleic acid detection: towards amplification-free genetic analysis.

Authors:  Rohan T Ranasinghe; Tom Brown
Journal:  Chem Commun (Camb)       Date:  2011-01-31       Impact factor: 6.222

7.  Invader LNA: efficient targeting of short double stranded DNA.

Authors:  Sujay P Sau; T Santhosh Kumar; Patrick J Hrdlicka
Journal:  Org Biomol Chem       Date:  2010-03-04       Impact factor: 3.876

8.  Amplification of an invA gene sequence of Salmonella typhimurium by polymerase chain reaction as a specific method of detection of Salmonella.

Authors:  K Rahn; S A De Grandis; R C Clarke; S A McEwen; J E Galán; C Ginocchio; R Curtiss; C L Gyles
Journal:  Mol Cell Probes       Date:  1992-08       Impact factor: 2.365

9.  Identification and characterization of second-generation invader locked nucleic acids (LNAs) for mixed-sequence recognition of double-stranded DNA.

Authors:  Sujay P Sau; Andreas S Madsen; Peter Podbevsek; Nicolai K Andersen; T Santhosh Kumar; Sanne Andersen; Rie L Rathje; Brooke A Anderson; Dale C Guenther; Saswata Karmakar; Pawan Kumar; Janez Plavec; Jesper Wengel; Patrick J Hrdlicka
Journal:  J Org Chem       Date:  2013-09-25       Impact factor: 4.354

10.  Foodborne illness acquired in the United States--major pathogens.

Authors:  Elaine Scallan; Robert M Hoekstra; Frederick J Angulo; Robert V Tauxe; Marc-Alain Widdowson; Sharon L Roy; Jeffery L Jones; Patricia M Griffin
Journal:  Emerg Infect Dis       Date:  2011-01       Impact factor: 6.883
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  10 in total

1.  Impact of non-nucleotidic bulges on recognition of mixed-sequence dsDNA by pyrene-functionalized Invader probes.

Authors:  Dale C Guenther; Raymond G Emehiser; Allison Inskeep; Saswata Karmakar; Patrick J Hrdlicka
Journal:  Org Biomol Chem       Date:  2020-06-24       Impact factor: 3.876

Review 2.  25 years and still going strong: 2'-O-(pyren-1-yl)methylribonucleotides - versatile building blocks for applications in molecular biology, diagnostics and materials science.

Authors:  Patrick J Hrdlicka; Saswata Karmakar
Journal:  Org Biomol Chem       Date:  2017-11-29       Impact factor: 3.876

3.  Recognition of double-stranded DNA using LNA-modified toehold Invader probes.

Authors:  Shiva P Adhikari; Philip Vukelich; Dale C Guenther; Saswata Karmakar; Patrick J Hrdlicka
Journal:  Org Biomol Chem       Date:  2021-11-03       Impact factor: 3.876

4.  Synthesis and characterization of oligodeoxyribonucleotides modified with 2'-thio-2'-deoxy-2'-S-(pyren-1-yl)methyluridine.

Authors:  Brooke A Anderson; Patrick J Hrdlicka
Journal:  Bioorg Med Chem Lett       Date:  2015-07-07       Impact factor: 2.823

5.  Recognition of mixed-sequence DNA duplexes: design guidelines for invaders based on 2'-O-(pyren-1-yl)methyl-RNA monomers.

Authors:  Saswata Karmakar; Dale C Guenther; Patrick J Hrdlicka
Journal:  J Org Chem       Date:  2013-11-20       Impact factor: 4.354

6.  Synthesis and characterization of oligodeoxyribonucleotides modified with 2'-amino-α-L-LNA adenine monomers: high-affinity targeting of single-stranded DNA.

Authors:  Nicolai K Andersen; Brooke A Anderson; Jesper Wengel; Patrick J Hrdlicka
Journal:  J Org Chem       Date:  2013-12-11       Impact factor: 4.354

7.  Nicked Invader probes: multistranded and sequence-unrestricted recognition of double-stranded DNA.

Authors:  Shiva P Adhikari; Saswata Karmakar; Patrick J Hrdlicka
Journal:  Org Biomol Chem       Date:  2022-02-02       Impact factor: 3.876

Review 8.  Recent Advances in Nucleic Acid Targeting Probes and Supramolecular Constructs Based on Pyrene-Modified Oligonucleotides.

Authors:  Olga A Krasheninina; Darya S Novopashina; Evgeny K Apartsin; Alya G Venyaminova
Journal:  Molecules       Date:  2017-11-30       Impact factor: 4.411

9.  Invader probes: Harnessing the energy of intercalation to facilitate recognition of chromosomal DNA for diagnostic applications.

Authors:  Dale C Guenther; Grace H Anderson; Saswata Karmakar; Brooke A Anderson; Bradley A Didion; Wei Guo; John P Verstegen; Patrick J Hrdlicka
Journal:  Chem Sci       Date:  2015-08-01       Impact factor: 9.825

10.  Merging Two Strategies for Mixed-Sequence Recognition of Double-Stranded DNA: Pseudocomplementary Invader Probes.

Authors:  Brooke A Anderson; Patrick J Hrdlicka
Journal:  J Org Chem       Date:  2016-03-30       Impact factor: 4.354
  10 in total

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