Literature DB >> 24035694

A journey toward Bioorthogonal Profiling of Protein Methylation inside living cells.

Rui Wang1, Minkui Luo.   

Abstract

Human protein methyltransferases (PMTs) play essential roles through methylating histone and nonhistone targets. It is very challenging to profile global methylation (or methylome) in the context of relevant cellular settings. Unlike other posttranslational modifications such as lysine acetylation or Ser/Thr/Tyr/His phosphorylation, methylation of lysine or arginine does not significantly alter its physical properties (e.g. charge and size) and therefore may not be probed readily by conventional biological tools such antibodies. It is also not trivial to assign unambiguously dynamic methylation events to specific PMTs given their potential redundancy. This review focuses on the decade-long progress in developing complementary chemical tools to elucidate targets of designated PMTs. One of such efforts was to develop the Bioorthogonal Profiling of Protein Methylation (BPPM) technology in vitro and inside living cells.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24035694      PMCID: PMC3823810          DOI: 10.1016/j.cbpa.2013.08.007

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  46 in total

1.  Bioorthogonal profiling of protein methylation using azido derivative of S-adenosyl-L-methionine.

Authors:  Kabirul Islam; Ian Bothwell; Yuling Chen; Caitlin Sengelaub; Rui Wang; Haiteng Deng; Minkui Luo
Journal:  J Am Chem Soc       Date:  2012-03-26       Impact factor: 15.419

Review 2.  Chemistry in living systems.

Authors:  Jennifer A Prescher; Carolyn R Bertozzi
Journal:  Nat Chem Biol       Date:  2005-06       Impact factor: 15.040

3.  A new tool for biotechnology: AdoMet-dependent methyltransferases.

Authors:  Saulius Klimasauskas; Elmar Weinhold
Journal:  Trends Biotechnol       Date:  2007-01-24       Impact factor: 19.536

4.  Formulating a fluorogenic assay to evaluate S-adenosyl-L-methionine analogues as protein methyltransferase cofactors.

Authors:  Rui Wang; Glorymar Ibáñez; Kabirul Islam; Weihong Zheng; Gil Blum; Caitlin Sengelaub; Minkui Luo
Journal:  Mol Biosyst       Date:  2011-08-24

Review 5.  Protein arginine methyltransferases and cancer.

Authors:  Yanzhong Yang; Mark T Bedford
Journal:  Nat Rev Cancer       Date:  2012-12-13       Impact factor: 60.716

6.  A subset of the histone H3 lysine 9 methyltransferases Suv39h1, G9a, GLP, and SETDB1 participate in a multimeric complex.

Authors:  Lauriane Fritsch; Philippe Robin; Jacques R R Mathieu; Mouloud Souidi; Hélène Hinaux; Claire Rougeulle; Annick Harel-Bellan; Maya Ameyar-Zazoua; Slimane Ait-Si-Ali
Journal:  Mol Cell       Date:  2010-01-15       Impact factor: 17.970

7.  Carm1 regulates Pax7 transcriptional activity through MLL1/2 recruitment during asymmetric satellite stem cell divisions.

Authors:  Yoh-Ichi Kawabe; Yu Xin Wang; Iain W McKinnell; Mark T Bedford; Michael A Rudnicki
Journal:  Cell Stem Cell       Date:  2012-08-02       Impact factor: 24.633

8.  Profiling protein methylation with cofactor analog containing terminal alkyne functionality.

Authors:  Gil Blum; Ian R Bothwell; Kabirul Islam; Minkui Luo
Journal:  Curr Protoc Chem Biol       Date:  2013

9.  A proteomic approach for the identification of novel lysine methyltransferase substrates.

Authors:  Dan Levy; Chih Long Liu; Ze Yang; Aaron M Newman; Ash A Alizadeh; Paul J Utz; Or Gozani
Journal:  Epigenetics Chromatin       Date:  2011-10-24       Impact factor: 4.954

10.  Programmable sequence-specific click-labeling of RNA using archaeal box C/D RNP methyltransferases.

Authors:  Migle Tomkuviene; Béatrice Clouet-d'Orval; Ignas Cerniauskas; Elmar Weinhold; Saulius Klimasauskas
Journal:  Nucleic Acids Res       Date:  2012-05-07       Impact factor: 16.971

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  19 in total

Review 1.  Histones: at the crossroads of peptide and protein chemistry.

Authors:  Manuel M Müller; Tom W Muir
Journal:  Chem Rev       Date:  2014-10-20       Impact factor: 60.622

2.  Functional AdoMet Isosteres Resistant to Classical AdoMet Degradation Pathways.

Authors:  Tyler D Huber; Fengbin Wang; Shanteri Singh; Brooke R Johnson; Jianjun Zhang; Manjula Sunkara; Steven G Van Lanen; Andrew J Morris; George N Phillips; Jon S Thorson
Journal:  ACS Chem Biol       Date:  2016-07-14       Impact factor: 5.100

Review 3.  Click Chemistry in Proteomic Investigations.

Authors:  Christopher G Parker; Matthew R Pratt
Journal:  Cell       Date:  2020-02-13       Impact factor: 41.582

4.  Profiling substrates of protein arginine N-methyltransferase 3 with S-adenosyl-L-methionine analogues.

Authors:  Han Guo; Rui Wang; Weihong Zheng; Yuling Chen; Gil Blum; Haiteng Deng; Minkui Luo
Journal:  ACS Chem Biol       Date:  2013-12-09       Impact factor: 5.100

Review 5.  The Bump-and-Hole Tactic: Expanding the Scope of Chemical Genetics.

Authors:  Kabirul Islam
Journal:  Cell Chem Biol       Date:  2018-08-02       Impact factor: 8.116

6.  Methionine Adenosyltransferase Engineering to Enable Bioorthogonal Platforms for AdoMet-Utilizing Enzymes.

Authors:  Tyler D Huber; Jonathan A Clinger; Yang Liu; Weijun Xu; Mitchell D Miller; George N Phillips; Jon S Thorson
Journal:  ACS Chem Biol       Date:  2020-03-03       Impact factor: 5.100

Review 7.  AdoMet analog synthesis and utilization: current state of the art.

Authors:  Tyler D Huber; Brooke R Johnson; Jianjun Zhang; Jon S Thorson
Journal:  Curr Opin Biotechnol       Date:  2016-08-06       Impact factor: 9.740

Review 8.  Inhibitors of protein methyltransferases as chemical tools.

Authors:  Minkui Luo
Journal:  Epigenomics       Date:  2015-12-08       Impact factor: 4.778

9.  Preparation, Assay, and Application of Chlorinase SalL for the Chemoenzymatic Synthesis of S-Adenosyl-l-Methionine and Analogs.

Authors:  Tony D Davis; Sylvia Kunakom; Michael D Burkart; Alessandra S Eustaquio
Journal:  Methods Enzymol       Date:  2018-04-02       Impact factor: 1.600

Review 10.  SAM/SAH Analogs as Versatile Tools for SAM-Dependent Methyltransferases.

Authors:  Jing Zhang; Yujun George Zheng
Journal:  ACS Chem Biol       Date:  2015-11-16       Impact factor: 5.100

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