Literature DB >> 17940006

Cyclic changes in metabolic state during the life of a yeast cell.

Benjamin P Tu1, Rachel E Mohler, Jessica C Liu, Kenneth M Dombek, Elton T Young, Robert E Synovec, Steven L McKnight.   

Abstract

Budding yeast undergo robust oscillations in oxygen consumption during continuous growth in a nutrient-limited environment. Using liquid chromatography-mass spectrometry and comprehensive 2D gas chromatography-mass spectrometry-based metabolite profiling methods, we have determined that the intracellular concentrations of many metabolites change periodically as a function of these metabolic cycles. These results reveal the logic of cellular metabolism during different phases of the life of a yeast cell. They may further indicate that oscillation in the abundance of key metabolites might help control the temporal regulation of cellular processes and the establishment of a cycle. Such oscillations in metabolic state might occur during the course of other biological cycles.

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Year:  2007        PMID: 17940006      PMCID: PMC2040445          DOI: 10.1073/pnas.0708365104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

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4.  Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.

Authors:  Benjamin P Tu; Andrzej Kudlicki; Maga Rowicka; Steven L McKnight
Journal:  Science       Date:  2005-10-27       Impact factor: 47.728

Review 5.  Rheostat control of gene expression by metabolites.

Authors:  Andreas G Ladurner
Journal:  Mol Cell       Date:  2006-10-06       Impact factor: 17.970

6.  Restriction of DNA replication to the reductive phase of the metabolic cycle protects genome integrity.

Authors:  Zheng Chen; Elizabeth A Odstrcil; Benjamin P Tu; Steven L McKnight
Journal:  Science       Date:  2007-06-29       Impact factor: 47.728

7.  Cyclic AMP mediates the cell cycle dynamics of energy metabolism in Saccharomyces cerevisiae.

Authors:  Dirk Müller; Simone Exler; Luciano Aguilera-Vázquez; Ester Guerrero-Martín; Matthias Reuss
Journal:  Yeast       Date:  2003-03       Impact factor: 3.239

8.  Identification of ATP-NADH kinase isozymes and their contribution to supply of NADP(H) in Saccharomyces cerevisiae.

Authors:  Feng Shi; Shigeyuki Kawai; Shigetarou Mori; Emi Kono; Kousaku Murata
Journal:  FEBS J       Date:  2005-07       Impact factor: 5.542

9.  The natural history of homocystinuria due to cystathionine beta-synthase deficiency.

Authors:  S H Mudd; F Skovby; H L Levy; K D Pettigrew; B Wilcken; R E Pyeritz; G Andria; G H Boers; I L Bromberg; R Cerone
Journal:  Am J Hum Genet       Date:  1985-01       Impact factor: 11.025

Review 10.  Mammalian circadian biology: elucidating genome-wide levels of temporal organization.

Authors:  Phillip L Lowrey; Joseph S Takahashi
Journal:  Annu Rev Genomics Hum Genet       Date:  2004       Impact factor: 8.929

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  131 in total

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2.  Spatiotemporal compartmentalization of key physiological processes during muscle precursor differentiation.

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Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-16       Impact factor: 11.205

Review 3.  Metabolism strikes back: metabolic flux regulates cell signaling.

Authors:  Christian M Metallo; Matthew G Vander Heiden
Journal:  Genes Dev       Date:  2010-12-15       Impact factor: 11.361

4.  Dynamics of oscillatory phenotypes in Saccharomyces cerevisiae reveal a network of genome-wide transcriptional oscillators.

Authors:  Shwe L Chin; Ian M Marcus; Robert R Klevecz; Caroline M Li
Journal:  FEBS J       Date:  2012-02-27       Impact factor: 5.542

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Journal:  Nat Struct Mol Biol       Date:  2009-05       Impact factor: 15.369

Review 6.  The nexus of chromatin regulation and intermediary metabolism.

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Journal:  Nature       Date:  2013-10-24       Impact factor: 49.962

7.  Metabolic cycles in a circannual hibernator.

Authors:  L Elaine Epperson; Anis Karimpour-Fard; Lawrence E Hunter; Sandra L Martin
Journal:  Physiol Genomics       Date:  2011-05-03       Impact factor: 3.107

8.  Acetyl-CoA drives the transcriptional growth program in yeast.

Authors:  Ling Cai; Benjamin P Tu
Journal:  Cell Cycle       Date:  2011-09-15       Impact factor: 4.534

Review 9.  Sirtuins-Mediated System-Level Regulation of Mammalian Tissues at the Interface between Metabolism and Cell Cycle: A Systematic Review.

Authors:  Parcival Maissan; Eva J Mooij; Matteo Barberis
Journal:  Biology (Basel)       Date:  2021-03-04

10.  Acetyl-CoA induces transcription of the key G1 cyclin CLN3 to promote entry into the cell division cycle in Saccharomyces cerevisiae.

Authors:  Lei Shi; Benjamin P Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-15       Impact factor: 11.205

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