Literature DB >> 24032628

Membrane proteins can have high kinetic stability.

Robert E Jefferson1, Tracy M Blois, James U Bowie.   

Abstract

Approximately 10% of water-soluble proteins are considered kinetically stable with unfolding half-lives in the range of weeks to millenia. These proteins only rarely sample the unfolded state and may never unfold on their respective biological time scales. It is still not known whether membrane proteins can be kinetically stable, however. Here we examine the subunit dissociation rate of the trimeric membrane enzyme, diacylglycerol kinase, from Escherichia coli as a proxy for complete unfolding. We find that dissociation occurs with a half-life of at least several weeks, demonstrating that membrane proteins can remain locked in a folded state for long periods of time. These results reveal that evolution can use kinetic stability to regulate the biological function of membrane proteins, as it can for soluble proteins. Moreover, it appears that the generation of kinetic stability could be a viable target for membrane protein engineering efforts.

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Year:  2013        PMID: 24032628      PMCID: PMC3839629          DOI: 10.1021/ja407232b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  42 in total

1.  Ser45 plays an important role in managing both the equilibrium and transition state energetics of the streptavidin-biotin system.

Authors:  D E Hyre; I Le Trong; S Freitag; R E Stenkamp; P S Stayton
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

2.  Detergents modulate dimerization, but not helicity, of the glycophorin A transmembrane domain.

Authors:  L E Fisher; D M Engelman; J N Sturgis
Journal:  J Mol Biol       Date:  1999-10-29       Impact factor: 5.469

3.  Energetic landscape of alpha-lytic protease optimizes longevity through kinetic stability.

Authors:  Sheila S Jaswal; Julie L Sohl; Jonathan H Davis; David A Agard
Journal:  Nature       Date:  2002-01-17       Impact factor: 49.962

4.  Kinetic study of folding and misfolding of diacylglycerol kinase in model membranes.

Authors:  J K Nagy; W L Lonzer; C R Sanders
Journal:  Biochemistry       Date:  2001-07-31       Impact factor: 3.162

5.  In vitro monomer swapping in EmrE, a multidrug transporter from Escherichia coli, reveals that the oligomer is the functional unit.

Authors:  D Rotem; N Sal-man; S Schuldiner
Journal:  J Biol Chem       Date:  2001-09-25       Impact factor: 5.157

6.  Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH.

Authors:  Christophe Herman; Sumit Prakash; Chi Zen Lu; Andreas Matouschek; Carol A Gross
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

7.  Mapping the oligomeric interface of diacylglycerol kinase by engineered thiol cross-linking: homologous sites in the transmembrane domain.

Authors:  J K Nagy; F W Lau; J U Bowie; C R Sanders
Journal:  Biochemistry       Date:  2000-04-11       Impact factor: 3.162

8.  Oligomeric structure of caveolin: implications for caveolae membrane organization.

Authors:  M Sargiacomo; P E Scherer; Z Tang; E Kübler; K S Song; M C Sanders; M P Lisanti
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205

9.  Inactivation mechanism of the membrane protein diacylglycerol kinase in detergent solution.

Authors:  Y Zhou; F W Lau; S Nauli; D Yang; J U Bowie
Journal:  Protein Sci       Date:  2001-02       Impact factor: 6.725

10.  Structural basis of protein kinetic stability: resistance to sodium dodecyl sulfate suggests a central role for rigidity and a bias toward beta-sheet structure.

Authors:  Marta Manning; Wilfredo Colón
Journal:  Biochemistry       Date:  2004-09-07       Impact factor: 3.162

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  23 in total

1.  Mapping the energy landscape for second-stage folding of a single membrane protein.

Authors:  Duyoung Min; Robert E Jefferson; James U Bowie; Tae-Young Yoon
Journal:  Nat Chem Biol       Date:  2015-10-19       Impact factor: 15.040

2.  GXXXG-Mediated Parallel and Antiparallel Dimerization of Transmembrane Helices and Its Inhibition by Cholesterol: Single-Pair FRET and 2D IR Studies.

Authors:  Yoshiaki Yano; Kotaro Kondo; Yuta Watanabe; Tianqi O Zhang; Jia-Jung Ho; Shinya Oishi; Nobutaka Fujii; Martin T Zanni; Katsumi Matsuzaki
Journal:  Angew Chem Int Ed Engl       Date:  2017-01-10       Impact factor: 15.336

3.  The dimerization equilibrium of a ClC Cl(-)/H(+) antiporter in lipid bilayers.

Authors:  Rahul Chadda; Venkatramanan Krishnamani; Kacey Mersch; Jason Wong; Marley Brimberry; Ankita Chadda; Ludmila Kolmakova-Partensky; Larry J Friedman; Jeff Gelles; Janice L Robertson
Journal:  Elife       Date:  2016-08-03       Impact factor: 8.140

Review 4.  Transmembrane β-barrels: Evolution, folding and energetics.

Authors:  Deepti Chaturvedi; Radhakrishnan Mahalakshmi
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-09-22       Impact factor: 3.747

Review 5.  Kinetic stability of membrane proteins.

Authors:  F Luis González Flecha
Journal:  Biophys Rev       Date:  2017-09-18

6.  Folding-Degradation Relationship of a Membrane Protein Mediated by the Universally Conserved ATP-Dependent Protease FtsH.

Authors:  Yiqing Yang; Ruiqiong Guo; Kristen Gaffney; Miyeon Kim; Shaima Muhammednazaar; Wei Tian; Boshen Wang; Jie Liang; Heedeok Hong
Journal:  J Am Chem Soc       Date:  2018-03-21       Impact factor: 15.419

7.  The safety dance: biophysics of membrane protein folding and misfolding in a cellular context.

Authors:  Jonathan P Schlebach; Charles R Sanders
Journal:  Q Rev Biophys       Date:  2014-11-25       Impact factor: 5.318

Review 8.  Applications of Single-Molecule Methods to Membrane Protein Folding Studies.

Authors:  Robert E Jefferson; Duyoung Min; Karolina Corin; Jing Yang Wang; James U Bowie
Journal:  J Mol Biol       Date:  2017-05-23       Impact factor: 5.469

9.  Folding and Misfolding of Human Membrane Proteins in Health and Disease: From Single Molecules to Cellular Proteostasis.

Authors:  Justin T Marinko; Hui Huang; Wesley D Penn; John A Capra; Jonathan P Schlebach; Charles R Sanders
Journal:  Chem Rev       Date:  2019-01-04       Impact factor: 60.622

10.  Reversible folding energetics of Yersinia Ail barrel reveals a hyperfluorescent intermediate.

Authors:  Ankit Gupta; Radhakrishnan Mahalakshmi
Journal:  Biochim Biophys Acta Biomembr       Date:  2019-10-28       Impact factor: 3.747

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