Literature DB >> 24028630

Magnitude and mechanism of charge enhancement of CH··O hydrogen bonds.

Upendra Adhikari1, Steve Scheiner.   

Abstract

Quantum calculations find that neutral methylamines and thioethers form complexes, with N-methylacetamide (NMA) as proton acceptor, with binding energies of 2-5 kcal/mol. This interaction is magnified by a factor of 4-9, bringing the binding energy up to as much as 20 kcal/mol, when a CH3(+) group is added to the proton donor. Complexes prefer trifurcated arrangements, wherein three separate methyl groups donate a proton to the O acceptor. Binding energies lessen when the systems are immersed in solvents of increasing polarity, but the ionic complexes retain their favored status even in water. The binding energy is reduced when the methyl groups are replaced by longer alkyl chains. The proton acceptor prefers to associate with those CH groups that are as close as possible to the S/N center of the formal positive charge. A single linear CH··O hydrogen bond (H-bond) is less favorable than is trifurcation with three separate methyl groups. A trifurcated arrangement with three H atoms of the same methyl group is even less favorable. Various means of analysis, including NBO, SAPT, NMR, and electron density shifts, all identify the (+)CH··O interaction as a true H-bond.

Entities:  

Year:  2013        PMID: 24028630     DOI: 10.1021/jp4081788

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  8 in total

1.  Molecular Basis of C-N Bond Cleavage by the Glycyl Radical Enzyme Choline Trimethylamine-Lyase.

Authors:  Smaranda Bodea; Michael A Funk; Emily P Balskus; Catherine L Drennan
Journal:  Cell Chem Biol       Date:  2016-09-24       Impact factor: 8.116

2.  A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases.

Authors:  Lauren J Rajakovich; Maria-Eirini Pandelia; Andrew J Mitchell; Wei-Chen Chang; Bo Zhang; Amie K Boal; Carsten Krebs; J Martin Bollinger
Journal:  Biochemistry       Date:  2019-03-07       Impact factor: 3.162

3.  Torsional and Electronic Factors Control the C-H⋅⋅⋅O Interaction.

Authors:  Russell W Driver; Timothy D W Claridge; Steve Scheiner; Martin D Smith
Journal:  Chemistry       Date:  2016-10-06       Impact factor: 5.236

Review 4.  Quantum Chemical Modeling of Hydrogen Bonding in Ionic Liquids.

Authors:  Patricia A Hunt
Journal:  Top Curr Chem (Cham)       Date:  2017-05-18

5.  Crystallographic and Computational Characterization of Methyl Tetrel Bonding in S-Adenosylmethionine-Dependent Methyltransferases.

Authors:  Raymond C Trievel; Steve Scheiner
Journal:  Molecules       Date:  2018-11-13       Impact factor: 4.411

6.  Molecular structure, NBO analysis of the hydrogen-bonded interactions, spectroscopic (FT-IR, FT-Raman), drug likeness and molecular docking of the novel anti COVID-2 molecule (2E)-N-methyl-2-[(4-oxo-4H-chromen-3-yl)methylidene]-hydrazinecarbothioamide (Dimer) - quantum chemical approach.

Authors:  S J Jenepha Mary; Sayantan Pradhan; C James
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2020-12-29       Impact factor: 4.098

7.  N+-C-H···O Hydrogen bonds in protein-ligand complexes.

Authors:  Yukihiro Itoh; Yusuke Nakashima; Shuichiro Tsukamoto; Takashi Kurohara; Miki Suzuki; Yoshitake Sakae; Masayuki Oda; Yuko Okamoto; Takayoshi Suzuki
Journal:  Sci Rep       Date:  2019-01-25       Impact factor: 4.379

Review 8.  New tricks for the glycyl radical enzyme family.

Authors:  Lindsey R F Backman; Michael A Funk; Christopher D Dawson; Catherine L Drennan
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-09-13       Impact factor: 8.250

  8 in total

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