Literature DB >> 24025842

Next-generation sequencing: The genome jigsaw.

Vivien Marx.   

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Year:  2013        PMID: 24025842     DOI: 10.1038/501261a

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


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  10 in total

1.  Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.

Authors:  Julian Parkhill; Mohammed Sebaihia; Andrew Preston; Lee D Murphy; Nicholas Thomson; David E Harris; Matthew T G Holden; Carol M Churcher; Stephen D Bentley; Karen L Mungall; Ana M Cerdeño-Tárraga; Louise Temple; Keith James; Barbara Harris; Michael A Quail; Mark Achtman; Rebecca Atkin; Steven Baker; David Basham; Nathalie Bason; Inna Cherevach; Tracey Chillingworth; Matthew Collins; Anne Cronin; Paul Davis; Jonathan Doggett; Theresa Feltwell; Arlette Goble; Nancy Hamlin; Heidi Hauser; Simon Holroyd; Kay Jagels; Sampsa Leather; Sharon Moule; Halina Norberczak; Susan O'Neil; Doug Ormond; Claire Price; Ester Rabbinowitsch; Simon Rutter; Mandy Sanders; David Saunders; Katherine Seeger; Sarah Sharp; Mark Simmonds; Jason Skelton; Robert Squares; Steven Squares; Kim Stevens; Louise Unwin; Sally Whitehead; Bart G Barrell; Duncan J Maskell
Journal:  Nat Genet       Date:  2003-08-10       Impact factor: 38.330

2.  The genome of woodland strawberry (Fragaria vesca).

Authors:  Vladimir Shulaev; Daniel J Sargent; Ross N Crowhurst; Todd C Mockler; Otto Folkerts; Arthur L Delcher; Pankaj Jaiswal; Keithanne Mockaitis; Aaron Liston; Shrinivasrao P Mane; Paul Burns; Thomas M Davis; Janet P Slovin; Nahla Bassil; Roger P Hellens; Clive Evans; Tim Harkins; Chinnappa Kodira; Brian Desany; Oswald R Crasta; Roderick V Jensen; Andrew C Allan; Todd P Michael; Joao Carlos Setubal; Jean-Marc Celton; D Jasper G Rees; Kelly P Williams; Sarah H Holt; Juan Jairo Ruiz Rojas; Mithu Chatterjee; Bo Liu; Herman Silva; Lee Meisel; Avital Adato; Sergei A Filichkin; Michela Troggio; Roberto Viola; Tia-Lynn Ashman; Hao Wang; Palitha Dharmawardhana; Justin Elser; Rajani Raja; Henry D Priest; Douglas W Bryant; Samuel E Fox; Scott A Givan; Larry J Wilhelm; Sushma Naithani; Alan Christoffels; David Y Salama; Jade Carter; Elena Lopez Girona; Anna Zdepski; Wenqin Wang; Randall A Kerstetter; Wilfried Schwab; Schuyler S Korban; Jahn Davik; Amparo Monfort; Beatrice Denoyes-Rothan; Pere Arus; Ron Mittler; Barry Flinn; Asaph Aharoni; Jeffrey L Bennetzen; Steven L Salzberg; Allan W Dickerman; Riccardo Velasco; Mark Borodovsky; Richard E Veilleux; Kevin M Folta
Journal:  Nat Genet       Date:  2010-12-26       Impact factor: 38.330

3.  Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution.

Authors:  Jeramiah J Smith; Shigehiro Kuraku; Carson Holt; Tatjana Sauka-Spengler; Ning Jiang; Michael S Campbell; Mark D Yandell; Tereza Manousaki; Axel Meyer; Ona E Bloom; Jennifer R Morgan; Joseph D Buxbaum; Ravi Sachidanandam; Carrie Sims; Alexander S Garruss; Malcolm Cook; Robb Krumlauf; Leanne M Wiedemann; Stacia A Sower; Wayne A Decatur; Jeffrey A Hall; Chris T Amemiya; Nil R Saha; Katherine M Buckley; Jonathan P Rast; Sabyasachi Das; Masayuki Hirano; Nathanael McCurley; Peng Guo; Nicolas Rohner; Clifford J Tabin; Paul Piccinelli; Greg Elgar; Magali Ruffier; Bronwen L Aken; Stephen M J Searle; Matthieu Muffato; Miguel Pignatelli; Javier Herrero; Matthew Jones; C Titus Brown; Yu-Wen Chung-Davidson; Kaben G Nanlohy; Scot V Libants; Chu-Yin Yeh; David W McCauley; James A Langeland; Zeev Pancer; Bernd Fritzsch; Pieter J de Jong; Baoli Zhu; Lucinda L Fulton; Brenda Theising; Paul Flicek; Marianne E Bronner; Wesley C Warren; Sandra W Clifton; Richard K Wilson; Weiming Li
Journal:  Nat Genet       Date:  2013-02-24       Impact factor: 38.330

4.  Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Authors:  Keith R Bradnam; Joseph N Fass; Anton Alexandrov; Paul Baranay; Michael Bechner; Inanç Birol; Sébastien Boisvert; Jarrod A Chapman; Guillaume Chapuis; Rayan Chikhi; Hamidreza Chitsaz; Wen-Chi Chou; Jacques Corbeil; Cristian Del Fabbro; T Roderick Docking; Richard Durbin; Dent Earl; Scott Emrich; Pavel Fedotov; Nuno A Fonseca; Ganeshkumar Ganapathy; Richard A Gibbs; Sante Gnerre; Elénie Godzaridis; Steve Goldstein; Matthias Haimel; Giles Hall; David Haussler; Joseph B Hiatt; Isaac Y Ho; Jason Howard; Martin Hunt; Shaun D Jackman; David B Jaffe; Erich D Jarvis; Huaiyang Jiang; Sergey Kazakov; Paul J Kersey; Jacob O Kitzman; James R Knight; Sergey Koren; Tak-Wah Lam; Dominique Lavenier; François Laviolette; Yingrui Li; Zhenyu Li; Binghang Liu; Yue Liu; Ruibang Luo; Iain Maccallum; Matthew D Macmanes; Nicolas Maillet; Sergey Melnikov; Delphine Naquin; Zemin Ning; Thomas D Otto; Benedict Paten; Octávio S Paulo; Adam M Phillippy; Francisco Pina-Martins; Michael Place; Dariusz Przybylski; Xiang Qin; Carson Qu; Filipe J Ribeiro; Stephen Richards; Daniel S Rokhsar; J Graham Ruby; Simone Scalabrin; Michael C Schatz; David C Schwartz; Alexey Sergushichev; Ted Sharpe; Timothy I Shaw; Jay Shendure; Yujian Shi; Jared T Simpson; Henry Song; Fedor Tsarev; Francesco Vezzi; Riccardo Vicedomini; Bruno M Vieira; Jun Wang; Kim C Worley; Shuangye Yin; Siu-Ming Yiu; Jianying Yuan; Guojie Zhang; Hao Zhang; Shiguo Zhou; Ian F Korf
Journal:  Gigascience       Date:  2013-07-22       Impact factor: 6.524

5.  The Norway spruce genome sequence and conifer genome evolution.

Authors:  Björn Nystedt; Nathaniel R Street; Anna Wetterbom; Andrea Zuccolo; Yao-Cheng Lin; Douglas G Scofield; Francesco Vezzi; Nicolas Delhomme; Stefania Giacomello; Andrey Alexeyenko; Riccardo Vicedomini; Kristoffer Sahlin; Ellen Sherwood; Malin Elfstrand; Lydia Gramzow; Kristina Holmberg; Jimmie Hällman; Olivier Keech; Lisa Klasson; Maxim Koriabine; Melis Kucukoglu; Max Käller; Johannes Luthman; Fredrik Lysholm; Totte Niittylä; Ake Olson; Nemanja Rilakovic; Carol Ritland; Josep A Rosselló; Juliana Sena; Thomas Svensson; Carlos Talavera-López; Günter Theißen; Hannele Tuominen; Kevin Vanneste; Zhi-Qiang Wu; Bo Zhang; Philipp Zerbe; Lars Arvestad; Rishikesh Bhalerao; Joerg Bohlmann; Jean Bousquet; Rosario Garcia Gil; Torgeir R Hvidsten; Pieter de Jong; John MacKay; Michele Morgante; Kermit Ritland; Björn Sundberg; Stacey Lee Thompson; Yves Van de Peer; Björn Andersson; Ove Nilsson; Pär K Ingvarsson; Joakim Lundeberg; Stefan Jansson
Journal:  Nature       Date:  2013-05-22       Impact factor: 49.962

Review 6.  The expanding scope of DNA sequencing.

Authors:  Jay Shendure; Erez Lieberman Aiden
Journal:  Nat Biotechnol       Date:  2012-11-08       Impact factor: 54.908

Review 7.  Current challenges in de novo plant genome sequencing and assembly.

Authors:  Michael C Schatz; Jan Witkowski; W Richard McCombie
Journal:  Genome Biol       Date:  2012       Impact factor: 13.583

8.  Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds.

Authors:  Rajinder Singh; Meilina Ong-Abdullah; Eng-Ti Leslie Low; Mohamad Arif Abdul Manaf; Rozana Rosli; Rajanaidu Nookiah; Leslie Cheng-Li Ooi; Siew-Eng Ooi; Kuang-Lim Chan; Mohd Amin Halim; Norazah Azizi; Jayanthi Nagappan; Blaire Bacher; Nathan Lakey; Steven W Smith; Dong He; Michael Hogan; Muhammad A Budiman; Ernest K Lee; Rob DeSalle; David Kudrna; Jose Luis Goicoechea; Rod A Wing; Richard K Wilson; Robert S Fulton; Jared M Ordway; Robert A Martienssen; Ravigadevi Sambanthamurthi
Journal:  Nature       Date:  2013-07-24       Impact factor: 49.962

9.  Sequencing the unsequenceable: expanded CGG-repeat alleles of the fragile X gene.

Authors:  Erick W Loomis; John S Eid; Paul Peluso; Jun Yin; Luke Hickey; David Rank; Sarah McCalmon; Randi J Hagerman; Flora Tassone; Paul J Hagerman
Journal:  Genome Res       Date:  2012-10-11       Impact factor: 9.043

10.  Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing.

Authors:  Andrew Kirby; Andreas Gnirke; David B Jaffe; Veronika Barešová; Nathalie Pochet; Brendan Blumenstiel; Chun Ye; Daniel Aird; Christine Stevens; James T Robinson; Moran N Cabili; Irit Gat-Viks; Edward Kelliher; Riza Daza; Matthew DeFelice; Helena Hůlková; Jana Sovová; Petr Vylet'al; Corinne Antignac; Mitchell Guttman; Robert E Handsaker; Danielle Perrin; Scott Steelman; Snaevar Sigurdsson; Steven J Scheinman; Carrie Sougnez; Kristian Cibulskis; Melissa Parkin; Todd Green; Elizabeth Rossin; Michael C Zody; Ramnik J Xavier; Martin R Pollak; Seth L Alper; Kerstin Lindblad-Toh; Stacey Gabriel; P Suzanne Hart; Aviv Regev; Chad Nusbaum; Stanislav Kmoch; Anthony J Bleyer; Eric S Lander; Mark J Daly
Journal:  Nat Genet       Date:  2013-02-10       Impact factor: 38.330

  10 in total
  17 in total

Review 1.  Individualized medicine from prewomb to tomb.

Authors:  Eric J Topol
Journal:  Cell       Date:  2014-03-27       Impact factor: 41.582

Review 2.  Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research.

Authors:  Vijender Chaitankar; Gökhan Karakülah; Rinki Ratnapriya; Felipe O Giuste; Matthew J Brooks; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2016-06-11       Impact factor: 21.198

3.  The genome-wide DNA sequence specificity of the anti-tumour drug bleomycin in human cells.

Authors:  Vincent Murray; Jon K Chen; Mark M Tanaka
Journal:  Mol Biol Rep       Date:  2016-05-17       Impact factor: 2.316

Review 4.  An emerging place for lung cancer genomics in 2013.

Authors:  Marissa G Daniels; Rayleen V Bowman; Ian A Yang; Ramaswamy Govindan; Kwun M Fong
Journal:  J Thorac Dis       Date:  2013-10       Impact factor: 2.895

5.  High-throughput physical map anchoring via BAC-pool sequencing.

Authors:  Kateřina Cviková; Federica Cattonaro; Michael Alaux; Nils Stein; Klaus Fx Mayer; Jaroslav Doležel; Jan Bartoš
Journal:  BMC Plant Biol       Date:  2015-04-11       Impact factor: 4.215

6.  Dynamic evolution of the GnRH receptor gene family in vertebrates.

Authors:  Barry L Williams; Yasuhisa Akazome; Yoshitaka Oka; Heather L Eisthen
Journal:  BMC Evol Biol       Date:  2014-10-25       Impact factor: 3.260

7.  Next-generation sequencing-based molecular diagnosis of neonatal hypotonia in Chinese Population.

Authors:  Yan Wang; Wei Peng; Hong-Yan Guo; Hui Li; Jie Tian; Yu-Jing Shi; Xiao Yang; Yao Yang; Wan-Qiao Zhang; Xin Liu; Guan-Nan Liu; Tao Deng; Yi-Min Sun; Wan-Li Xing; Jing Cheng; Zhi-Chun Feng
Journal:  Sci Rep       Date:  2016-06-29       Impact factor: 4.379

8.  The Dynamic Distribution of Small-Tail Han Sheep Microbiota across Different Intestinal Segments.

Authors:  Hao Zhang; Mingxu Shao; He Huang; Shujuan Wang; Lili Ma; Huining Wang; Liping Hu; Kai Wei; Ruiliang Zhu
Journal:  Front Microbiol       Date:  2018-01-31       Impact factor: 5.640

9.  Rapid whole genome sequencing of Miyazaki-Bali/2007 Pteropine orthoreovirus by modified rolling circular amplification with adaptor ligation - next generation sequencing.

Authors:  Harpal Singh; Tomoki Yoshikawa; Takeshi Kobayashi; Shuetsu Fukushi; Hideki Tani; Satoshi Taniguchi; Aiko Fukuma; Ming Yang; Masami Sugamata; Masayuki Shimojima; Masayuki Saijo
Journal:  Sci Rep       Date:  2015-11-12       Impact factor: 4.379

10.  BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes.

Authors:  Helena Staňková; Alex R Hastie; Saki Chan; Jan Vrána; Zuzana Tulpová; Marie Kubaláková; Paul Visendi; Satomi Hayashi; Mingcheng Luo; Jacqueline Batley; David Edwards; Jaroslav Doležel; Hana Šimková
Journal:  Plant Biotechnol J       Date:  2016-01-23       Impact factor: 9.803

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