Literature DB >> 24025200

Through the eye of the needle: recent advances in understanding biopolymer translocation.

Debabrata Panja1, Gerard T Barkema, Anatoly B Kolomeisky.   

Abstract

In recent years polymer translocation, i.e., transport of polymeric molecules through nanometer-sized pores and channels embedded in membranes, has witnessed strong advances. It is now possible to observe single-molecule polymer dynamics during the motion through channels with unprecedented spatial and temporal resolution. These striking experimental studies have stimulated many theoretical developments. In this short theory-experiment review, we discuss recent progress in this field with a strong focus on non-equilibrium aspects of polymer dynamics during the translocation process.

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Year:  2013        PMID: 24025200     DOI: 10.1088/0953-8984/25/41/413101

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  9 in total

1.  Smooth DNA transport through a narrowed pore geometry.

Authors:  Spencer Carson; James Wilson; Aleksei Aksimentiev; Meni Wanunu
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

Review 2.  Flow of DNA in micro/nanofluidics: From fundamentals to applications.

Authors:  Lea Rems; Durgesh Kawale; L James Lee; Pouyan E Boukany
Journal:  Biomicrofluidics       Date:  2016-07-20       Impact factor: 2.800

Review 3.  Multi-resolution simulation of DNA transport through large synthetic nanostructures.

Authors:  Adnan Choudhary; Christopher Maffeo; Aleksei Aksimentiev
Journal:  Phys Chem Chem Phys       Date:  2022-02-02       Impact factor: 3.676

4.  Cytokinesis breaks dicentric chromosomes preferentially at pericentromeric regions and telomere fusions.

Authors:  Virginia Lopez; Natalja Barinova; Masayuki Onishi; Sabrina Pobiega; John R Pringle; Karine Dubrana; Stéphane Marcand
Journal:  Genes Dev       Date:  2015-02-01       Impact factor: 11.361

Review 5.  Wanted: scalable tracers for diffusion measurements.

Authors:  Michael J Saxton
Journal:  J Phys Chem B       Date:  2014-11-03       Impact factor: 2.991

6.  Vesicle Geometries Enabled by Semiflexible Polymer.

Authors:  Ping Li; Nianqiang Kang; Aihua Chai; Dan Lu; Shuiping Luo; Zhiyong Yang
Journal:  Polymers (Basel)       Date:  2022-02-15       Impact factor: 4.329

7.  A general theory of polymer ejection tested in a quasi two-dimensional space.

Authors:  Pai-Yi Hsiao; Wei-Yei Chen
Journal:  Sci Rep       Date:  2021-07-19       Impact factor: 4.379

8.  Periodic forces trigger knot untying during translocation of knotted proteins.

Authors:  Piotr Szymczak
Journal:  Sci Rep       Date:  2016-03-21       Impact factor: 4.379

9.  Asymmetric dynamics of DNA entering and exiting a strongly confining nanopore.

Authors:  Nicholas A W Bell; Kaikai Chen; Sandip Ghosal; Maria Ricci; Ulrich F Keyser
Journal:  Nat Commun       Date:  2017-08-30       Impact factor: 14.919

  9 in total

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