Literature DB >> 24024617

Characterizing the secondary protein structure of black widow dragline silk using solid-state NMR and X-ray diffraction.

Janelle E Jenkins1, Sujatha Sampath, Emily Butler, Jihyun Kim, Robert W Henning, Gregory P Holland, Jeffery L Yarger.   

Abstract

This study provides a detailed secondary structural characterization of major ampullate dragline silk from Latrodectus hesperus (black widow) spiders. X-ray diffraction results show that the structure of black widow major ampullate silk fibers is comprised of stacked β-sheet nanocrystallites oriented parallel to the fiber axis and an amorphous region with oriented (anisotropic) and isotropic components. The combination of two-dimensional (2D) (13)C-(13)C through-space and through-bond solid-state NMR experiments provide chemical shifts that are used to determine detailed information about the amino acid motif secondary structure in black widow spider dragline silk. Individual amino acids are incorporated into different repetitive motifs that make up the majority of this protein-based biopolymer. From the solid-state NMR measurements, we assign distinct secondary conformations to each repetitive amino acid motif and, hence, to the amino acids that make up the motifs. Specifically, alanine is incorporated in β-sheet (poly(Alan) and poly(Gly-Ala)), 3(1)-helix (poly(Gly-Gly-Xaa), and α-helix (poly(Gln-Gln-Ala-Tyr)) components. Glycine is determined to be in β-sheet (poly(Gly-Ala)) and 3(1)-helical (poly(Gly-Gly-X(aa))) regions, while serine is present in β-sheet (poly(Gly-Ala-Ser)), 3(1)-helix (poly(Gly-Gly-Ser)), and β-turn (poly(Gly-Pro-Ser)) structures. These various motif-specific secondary structural elements are quantitatively correlated to the primary amino acid sequence of major ampullate spidroin 1 and 2 (MaSp1 and MaSp2) and are shown to form a self-consistent model for black widow dragline silk.

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Year:  2013        PMID: 24024617      PMCID: PMC3914425          DOI: 10.1021/bm400791u

Source DB:  PubMed          Journal:  Biomacromolecules        ISSN: 1525-7797            Impact factor:   6.988


  34 in total

1.  Molecular chain orientation in supercontracted and re-extended spider silk.

Authors:  D T Grubb; G Ji
Journal:  Int J Biol Macromol       Date:  1999 Mar-Apr       Impact factor: 6.953

2.  Comparative studies of fibroins. II. The crystal structures of various fibroins.

Authors:  J O WARWICKER
Journal:  J Mol Biol       Date:  1960-12       Impact factor: 5.469

3.  Isolation of a clone encoding a second dragline silk fibroin. Nephila clavipes dragline silk is a two-protein fiber.

Authors:  M B Hinman; R V Lewis
Journal:  J Biol Chem       Date:  1992-09-25       Impact factor: 5.157

4.  Expression of EGFP-spider dragline silk fusion protein in BmN cells and larvae of silkworm showed the solubility is primary limit for dragline proteins yield.

Authors:  Yuansong Zhang; Junhua Hu; Yungen Miao; Aichun Zhao; Tianfu Zhao; Dayang Wu; Liefeng Liang; Ayumi Miikura; Kunihiro Shiomi; Zenta Kajiura; Masao Nakagaki
Journal:  Mol Biol Rep       Date:  2007-05-25       Impact factor: 2.316

5.  Spider minor ampullate silk proteins contain new repetitive sequences and highly conserved non-silk-like "spacer regions".

Authors:  M A Colgin; R V Lewis
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

6.  Molecular and mechanical properties of major ampullate silk of the black widow spider, Latrodectus hesperus.

Authors:  Barbara A Lawrence; Craig A Vierra; Anne M F Moore
Journal:  Biomacromolecules       Date:  2004 May-Jun       Impact factor: 6.988

7.  Determining secondary structure in spider dragline silk by carbon-carbon correlation solid-state NMR spectroscopy.

Authors:  Gregory P Holland; Melinda S Creager; Janelle E Jenkins; Randolph V Lewis; Jeffery L Yarger
Journal:  J Am Chem Soc       Date:  2008-07-02       Impact factor: 15.419

8.  Structure and dynamics of aromatic residues in spider silk: 2D carbon correlation NMR of dragline fibers.

Authors:  Thomas Izdebski; Paul Akhenblit; Janelle E Jenkins; Jeffery L Yarger; Gregory P Holland
Journal:  Biomacromolecules       Date:  2010-01-11       Impact factor: 6.988

9.  X-ray diffraction study of nanocrystalline and amorphous structure within major and minor ampullate dragline spider silks.

Authors:  Sujatha Sampath; Thomas Isdebski; Janelle E Jenkins; Joel V Ayon; Robert W Henning; Joseph P R O Orgel; Olga Antipoa; Jeffery L Yarger
Journal:  Soft Matter       Date:  2012-07-07       Impact factor: 3.679

10.  Proline and processing of spider silks.

Authors:  Yi Liu; Alexander Sponner; David Porter; Fritz Vollrath
Journal:  Biomacromolecules       Date:  2007-12-04       Impact factor: 6.988

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  17 in total

1.  Hierarchical spidroin micellar nanoparticles as the fundamental precursors of spider silks.

Authors:  Lucas R Parent; David Onofrei; Dian Xu; Dillan Stengel; John D Roehling; J Bennett Addison; Christopher Forman; Samrat A Amin; Brian R Cherry; Jeffery L Yarger; Nathan C Gianneschi; Gregory P Holland
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-22       Impact factor: 11.205

2.  Structural hysteresis in dragline spider silks induced by supercontraction: An x-ray fiber micro-diffraction study.

Authors:  Sujatha Sampath; Jeffery L Yarger
Journal:  RSC Adv       Date:  2015-01-01       Impact factor: 3.361

3.  Structural characterization of nanofiber silk produced by embiopterans (webspinners).

Authors:  J Bennett Addison; Thomas M Osborn Popp; Warner S Weber; Janice S Edgerly; Gregory P Holland; Jeffery L Yarger
Journal:  RSC Adv       Date:  2014       Impact factor: 3.361

4.  Protein secondary structure of Green Lynx spider dragline silk investigated by solid-state NMR and X-ray diffraction.

Authors:  Dian Xu; Xiangyan Shi; Forrest Thompson; Warner S Weber; Qiushi Mou; Jeffery L Yarger
Journal:  Int J Biol Macromol       Date:  2015-07-29       Impact factor: 6.953

5.  Correlation between protein secondary structure and mechanical performance for the ultra-tough dragline silk of Darwin's bark spider.

Authors:  K Zin Htut; Angela M Alicea-Serrano; Saranshu Singla; Ingi Agnarsson; Jessica E Garb; Matjaž Kuntner; Matjaž Gregorič; Robert A Haney; Mohammad Marhabaie; Todd A Blackledge; Ali Dhinojwala
Journal:  J R Soc Interface       Date:  2021-06-16       Impact factor: 4.293

6.  Secondary Structure Adopted by the Gly-Gly-X Repetitive Regions of Dragline Spider Silk.

Authors:  Geoffrey M Gray; Arjan van der Vaart; Chengchen Guo; Justin Jones; David Onofrei; Brian R Cherry; Randolph V Lewis; Jeffery L Yarger; Gregory P Holland
Journal:  Int J Mol Sci       Date:  2016-12-02       Impact factor: 5.923

7.  Conformation and dynamics of soluble repetitive domain elucidates the initial β-sheet formation of spider silk.

Authors:  Nur Alia Oktaviani; Akimasa Matsugami; Ali D Malay; Fumiaki Hayashi; David L Kaplan; Keiji Numata
Journal:  Nat Commun       Date:  2018-05-29       Impact factor: 14.919

8.  Evidence of Decoupling Protein Structure from Spidroin Expression in Spider Dragline Silks.

Authors:  Sean J Blamires; Michael M Kasumovic; I-Min Tso; Penny J Martens; James M Hook; Aditya Rawal
Journal:  Int J Mol Sci       Date:  2016-08-09       Impact factor: 5.923

9.  Multiscale mechanisms of nutritionally induced property variation in spider silks.

Authors:  Sean J Blamires; Madeleine Nobbs; Penny J Martens; I-Min Tso; Wei-Tsung Chuang; Chung-Kai Chang; Hwo-Shuenn Sheu
Journal:  PLoS One       Date:  2018-02-01       Impact factor: 3.240

Review 10.  Structure and Dynamics of Spider Silk Studied with Solid-State Nuclear Magnetic Resonance and Molecular Dynamics Simulation.

Authors:  Tetsuo Asakura
Journal:  Molecules       Date:  2020-06-05       Impact factor: 4.411

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