Literature DB >> 24022151

Systematic investigation of cancer-associated somatic point mutations in SNP databases.

HyunChul Jung1, Thomas Bleazard, Jongkeun Lee, Dongwan Hong.   

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Year:  2013        PMID： 24022151     DOI： 10.1038/nbt.2681

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  20 in total

1.  dbSNP: the NCBI database of genetic variation.

Authors:  S T Sherry; M H Ward; M Kholodov; J Baker; L Phan; E M Smigielski; K Sirotkin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 2.  Architecture of inherited susceptibility to common cancer.

Authors:  Olivia Fletcher; Richard S Houlston
Journal:  Nat Rev Cancer       Date:  2010-05       Impact factor: 60.716

3.  A method and server for predicting damaging missense mutations.

Authors:  Ivan A Adzhubei; Steffen Schmidt; Leonid Peshkin; Vasily E Ramensky; Anna Gerasimova; Peer Bork; Alexey S Kondrashov; Shamil R Sunyaev
Journal:  Nat Methods       Date:  2010-04       Impact factor: 28.547

4.  GWAS meets TCGA to illuminate mechanisms of cancer predisposition.

Authors:  Hyun Seok Kim; John D Minna; Michael A White
Journal:  Cell       Date:  2013-01-31       Impact factor: 41.582

5.  Loss-of-function mutations in Notch receptors in cutaneous and lung squamous cell carcinoma.

Authors:  Nicholas J Wang; Zachary Sanborn; Kelly L Arnett; Laura J Bayston; Wilson Liao; Charlotte M Proby; Irene M Leigh; Eric A Collisson; Patricia B Gordon; Lakshmi Jakkula; Sally Pennypacker; Yong Zou; Mimansa Sharma; Jeffrey P North; Swapna S Vemula; Theodora M Mauro; Isaac M Neuhaus; Philip E Leboit; Joe S Hur; Kyunghee Park; Nam Huh; Pui-Yan Kwok; Sarah T Arron; Pierre P Massion; Allen E Bale; David Haussler; James E Cleaver; Joe W Gray; Paul T Spellman; Andrew P South; Jon C Aster; Stephen C Blacklow; Raymond J Cho
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-17       Impact factor: 11.205

6.  COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer.

Authors:  Simon A Forbes; Nidhi Bindal; Sally Bamford; Charlotte Cole; Chai Yin Kok; David Beare; Mingming Jia; Rebecca Shepherd; Kenric Leung; Andrew Menzies; Jon W Teague; Peter J Campbell; Michael R Stratton; P Andrew Futreal
Journal:  Nucleic Acids Res       Date:  2010-10-15       Impact factor: 16.971

7.  Predicting the functional impact of protein mutations: application to cancer genomics.

Authors:  Boris Reva; Yevgeniy Antipin; Chris Sander
Journal:  Nucleic Acids Res       Date:  2011-07-03       Impact factor: 16.971

8.  The mutational landscape of lethal castration-resistant prostate cancer.

Authors:  Catherine S Grasso; Yi-Mi Wu; Dan R Robinson; Xuhong Cao; Saravana M Dhanasekaran; Amjad P Khan; Michael J Quist; Xiaojun Jing; Robert J Lonigro; J Chad Brenner; Irfan A Asangani; Bushra Ateeq; Sang Y Chun; Javed Siddiqui; Lee Sam; Matt Anstett; Rohit Mehra; John R Prensner; Nallasivam Palanisamy; Gregory A Ryslik; Fabio Vandin; Benjamin J Raphael; Lakshmi P Kunju; Daniel R Rhodes; Kenneth J Pienta; Arul M Chinnaiyan; Scott A Tomlins
Journal:  Nature       Date:  2012-07-12       Impact factor: 49.962

9.  Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders.

Authors:  Ada Hamosh; Alan F Scott; Joanna S Amberger; Carol A Bocchini; Victor A McKusick
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

10.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962
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  10 in total

Review 1.  Detecting Somatic Mutations in Normal Cells.

Authors:  Yanmei Dou; Heather D Gold; Lovelace J Luquette; Peter J Park
Journal:  Trends Genet       Date:  2018-05-03       Impact factor: 11.639

Review 2.  The role of replicates for error mitigation in next-generation sequencing.

Authors:  Kimberly Robasky; Nathan E Lewis; George M Church
Journal:  Nat Rev Genet       Date:  2013-12-10       Impact factor: 53.242

3.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

4.  Role of variant allele fraction and rare SNP filtering to improve cellular DNA repair endpoint association.

Authors:  David M Vossen; Caroline V M Verhagen; Reidar Grénman; Roelof J C Kluin; Marcel Verheij; Michiel W M van den Brekel; Lodewyk F A Wessels; Conchita Vens
Journal:  PLoS One       Date:  2018-11-08       Impact factor: 3.240

5.  Prospective analysis of 895 patients on a UK Genomics Review Board.

Authors:  David Allan Moore; Marina Kushnir; Gabriel Mak; Helen Winter; Teresa Curiel; Mark Voskoboynik; Michele Moschetta; Nataliya Rozumna-Martynyuk; Kevin Balbi; Philip Bennett; Martin Forster; Anjana Kulkarni; Debra Haynes; Charles Swanton; Hendrik-Tobias Arkenau
Journal:  ESMO Open       Date:  2019-03-21

6.  Genome-wide mutational signatures in low-coverage whole genome sequencing of cell-free DNA.

Authors:  Jonathan C M Wan; Dennis Stephens; Lingqi Luo; James R White; Caitlin M Stewart; Benoît Rousseau; Dana W Y Tsui; Luis A Diaz
Journal:  Nat Commun       Date:  2022-08-23       Impact factor: 17.694

7.  Integrated molecular profiling of patient-derived ovarian cancer models identifies clinically relevant signatures and tumor vulnerabilities.

Authors:  Michela Lupia; Valentina Melocchi; Francesca Bizzaro; Pietro Lo Riso; Elisa Dama; Micol Baronio; Alberto Ranghiero; Massimo Barberis; Loris Bernard; Giovanni Bertalot; Raffaella Giavazzi; Giuseppe Testa; Fabrizio Bianchi; Ugo Cavallaro
Journal:  Int J Cancer       Date:  2022-03-14       Impact factor: 7.316

8.  Evaluation of ultra-deep targeted sequencing for personalized breast cancer care.

Authors:  Olivier Harismendy; Richard B Schwab; Hakan Alakus; Shawn E Yost; Hiroko Matsui; Farnaz Hasteh; Anne M Wallace; Hannah L Park; Lisa Madlensky; Barbara Parker; Philip M Carpenter; Kristen Jepsen; Hoda Anton-Culver; Kelly A Frazer
Journal:  Breast Cancer Res       Date:  2013-12-10       Impact factor: 6.466

9.  Systematic analysis of mutation distribution in three dimensional protein structures identifies cancer driver genes.

Authors:  Akihiro Fujimoto; Yukinori Okada; Keith A Boroevich; Tatsuhiko Tsunoda; Hiroaki Taniguchi; Hidewaki Nakagawa
Journal:  Sci Rep       Date:  2016-05-26       Impact factor: 4.379

10.  A Pilot Study for the Feasibility of Exome-Sequencing in Circulating Tumor Cells Versus Single Metastatic Biopsies in Breast Cancer.

Authors:  Pushpinder Kaur; Daniel Campo; Tania B Porras; Alexander Ring; Janice Lu; Yvonne Chairez; Yunyun Su; Irene Kang; Julie E Lang
Journal:  Int J Mol Sci       Date:  2020-07-08       Impact factor: 5.923
  10 in total

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