Literature DB >> 24015801

DNA polymerase V kinetics support the instructive nature of an oxidized abasic lesion in Escherichia coli.

John Ernest V Bajacan1, Marc M Greenberg.   

Abstract

Translesion synthesis past an oxidized abasic site, 2-deoxyribonolactone, in Escherichia coli results in high levels of dG incorporation and is dependent upon DNA polymerase V (Pol V). Kinetic experiments performed here affirm that Pol V preferentially incorporates dG opposite 2-deoxyribonolactone (L). Pol V discriminates between dG and dA on the basis of the apparent KD, suggesting that L provides instructive structural information to the enzyme despite lacking a Watson-Crick base.

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Year:  2013        PMID: 24015801      PMCID: PMC3817503          DOI: 10.1021/bi400997h

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  17 in total

1.  Mutagenic effects of 2-deoxyribonolactone in Escherichia coli. An abasic lesion that disobeys the A-rule.

Authors:  Kelly M Kroeger; Yu Lin Jiang; Yoke Wah Kow; Myron F Goodman; Marc M Greenberg
Journal:  Biochemistry       Date:  2004-06-01       Impact factor: 3.162

2.  Crystallographic snapshots of a replicative DNA polymerase encountering an abasic site.

Authors:  Matthew Hogg; Susan S Wallace; Sylvie Doublié
Journal:  EMBO J       Date:  2004-04-01       Impact factor: 11.598

3.  Nucleotide insertion kinetics opposite abasic lesions in DNA.

Authors:  S K Randall; R Eritja; B E Kaplan; J Petruska; M F Goodman
Journal:  J Biol Chem       Date:  1987-05-15       Impact factor: 5.157

4.  Simple and efficient purification of Escherichia coli DNA polymerase V: cofactor requirements for optimal activity and processivity in vitro.

Authors:  Kiyonobu Karata; Alexandra Vaisman; Myron F Goodman; Roger Woodgate
Journal:  DNA Repair (Amst)       Date:  2012-02-15

5.  Varying DNA base-pair size in subangstrom increments: evidence for a loose, not large, active site in low-fidelity Dpo4 polymerase.

Authors:  Shin Mizukami; Tae Woo Kim; Sandra A Helquist; Eric T Kool
Journal:  Biochemistry       Date:  2006-03-07       Impact factor: 3.162

6.  A specific partner for abasic damage in DNA.

Authors:  T J Matray; E T Kool
Journal:  Nature       Date:  1999-06-17       Impact factor: 49.962

7.  Replication of an oxidized abasic site in Escherichia coli by a dNTP-stabilized misalignment mechanism that reads upstream and downstream nucleotides.

Authors:  Kelly M Kroeger; Jaeseung Kim; Myron F Goodman; Marc M Greenberg
Journal:  Biochemistry       Date:  2006-04-18       Impact factor: 3.162

8.  Enhancing the "A-rule" of translesion DNA synthesis: promutagenic DNA synthesis using modified nucleoside triphosphates.

Authors:  Babho Devadoss; Irene Lee; Anthony J Berdis
Journal:  Biochemistry       Date:  2007-11-06       Impact factor: 3.162

9.  The active form of DNA polymerase V is UmuD'(2)C-RecA-ATP.

Authors:  Qingfei Jiang; Kiyonobu Karata; Roger Woodgate; Michael M Cox; Myron F Goodman
Journal:  Nature       Date:  2009-07-16       Impact factor: 49.962

10.  Kinetics of deoxyribonucleotide insertion and extension at abasic template lesions in different sequence contexts using HIV-1 reverse transcriptase.

Authors:  H Cai; L B Bloom; R Eritja; M F Goodman
Journal:  J Biol Chem       Date:  1993-11-05       Impact factor: 5.157

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  1 in total

1.  The A-Rule and Deletion Formation During Abasic and Oxidized Abasic Site Bypass by DNA Polymerase θ.

Authors:  Daniel J Laverty; April M Averill; Sylvie Doublié; Marc M Greenberg
Journal:  ACS Chem Biol       Date:  2017-05-01       Impact factor: 5.100

  1 in total

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