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Literature DB >> 24014902

Sizing up Septoria.

W Quaedvlieg¹, G J M Verkley, H-D Shin, R W Barreto, A C Alfenas, W J Swart, J Z Groenewald, P W Crous.

Abstract

Septoria represents a genus of plant pathogenic fungi with a wide geographic distribution, commonly associated with leaf spots and stem cankers of a broad range of plant hosts. A major aim of this study was to resolve the phylogenetic generic limits of Septoria, Stagonospora, and other related genera such as Sphaerulina, Phaeosphaeria and Phaeoseptoria using sequences of the the partial 28S nuclear ribosomal RNA and RPB2 genes of a large set of isolates. Based on these results Septoria is shown to be a distinct genus in the Mycosphaerellaceae, which has mycosphaerella-like sexual morphs. Several septoria-like species are now accommodated in Sphaerulina, a genus previously linked to this complex. Phaeosphaeria (based on P. oryzae) is shown to be congeneric with Phaeoseptoria (based on P. papayae), which is reduced to synonymy under the former. Depazea nodorum (causal agent of nodorum blotch of cereals) and Septoria avenae (causal agent of avenae blotch of barley and rye) are placed in a new genus, Parastagonospora, which is shown to be distinct from Stagonospora (based on S. paludosa) and Phaeosphaeria. Partial nucleotide sequence data for five gene loci, ITS, LSU, EF-1α, RPB2 and Btub were generated for all of these isolates. A total of 47 clades or genera were resolved, leading to the introduction of 14 new genera, 36 new species, and 19 new combinations. TAXONOMIC NOVELTIES: New genera - Acicuseptoria Quaedvlieg, Verkley & Crous, Cylindroseptoria Quaedvlieg, Verkley & Crous, Kirstenboschia Quaedvlieg, Verkley & Crous, Neoseptoria Quaedvlieg, Verkley & Crous, Neostagonospora Quaedvlieg, Verkley & Crous, Parastagonospora Quaedvlieg, Verkley & Crous, Polyphialoseptoria Quaedvlieg, R.W. Barreto, Verkley & Crous, Ruptoseptoria Quaedvlieg, Verkley & Crous, Septorioides Quaedvlieg, Verkley & Crous, Setoseptoria Quaedvlieg, Verkley & Crous, Stromatoseptoria Quaedvlieg, Verkley & Crous, Vrystaatia Quaedvlieg, W.J. Swart, Verkley & Crous, Xenobotryosphaeria Quaedvlieg, Verkley & Crous, Xenoseptoria Quaedvlieg, H.D. Shin, Verkley & Crous. New species - Acicuseptoria rumicis Quaedvlieg, Verkley & Crous, Caryophylloseptoria pseudolychnidis Quaedvlieg, H.D. Shin, Verkley & Crous, Coniothyrium sidae Quaedvlieg, Verkley, R.W. Barreto & Crous, Corynespora leucadendri Quaedvlieg, Verkley & Crous, Cylindroseptoria ceratoniae Quaedvlieg, Verkley & Crous, Cylindroseptoria pistaciae Quaedvlieg, Verkley & Crous, Kirstenboschia diospyri Quaedvlieg, Verkley & Crous, Neoseptoria caricis Quaedvlieg, Verkley & Crous, Neostagonospora caricis Quaedvlieg, Verkley & Crous, Neostagonospora elegiae Quaedvlieg, Verkley & Crous, Paraphoma dioscoreae Quaedvlieg, H.D. Shin, Verkley & Crous, Parastagonospora caricis Quaedvlieg, Verkley & Crous, Parastagonospora poae Quaedvlieg, Verkley & Crous, Phlyctema vincetoxici Quaedvlieg, Verkley & Crous, Polyphialoseptoria tabebuiae-serratifoliae Quaedvlieg, Alfenas & Crous, Polyphialoseptoria terminaliae Quaedvlieg, R.W. Barreto, Verkley & Crous, Pseudoseptoria collariana Quaedvlieg, Verkley & Crous, Pseudoseptoria obscura Quaedvlieg, Verkley & Crous, Sclerostagonospora phragmiticola Quaedvlieg, Verkley & Crous, Septoria cretae Quaedvlieg, Verkley & Crous, Septoria glycinicola Quaedvlieg, H.D. Shin, Verkley & Crous, Septoria oenanthicola Quaedvlieg, H.D. Shin, Verkley & Crous, Septoria pseudonapelli Quaedvlieg, H.D. Shin, Verkley & Crous, Setophoma chromolaenae Quaedvlieg, Verkley, R.W. Barreto & Crous, Setoseptoria phragmitis Quaedvlieg, Verkley & Crous, Sphaerulina amelanchier Quaedvlieg, Verkley & Crous, Sphaerulina pseudovirgaureae Quaedvlieg, Verkley & Crous, Sphaerulina viciae Quaedvlieg, H.D. Shin, Verkley & Crous, Stagonospora duoseptata Quaedvlieg, Verkley & Crous, Stagonospora perfecta Quaedvlieg, Verkley & Crous, Stagonospora pseudocaricis Quaedvlieg, Verkley, Gardiennet & Crous, Stagonospora pseudovitensis Quaedvlieg, Verkley & Crous, Stagonospora uniseptata Quaedvlieg, Verkley & Crous, Vrystaatia aloeicola Quaedvlieg, Verkley, W.J. Swart & Crous, Xenobotryosphaeria calamagrostidis Quaedvlieg, Verkley & Crous, Xenoseptoria neosaccardoi Quaedvlieg, H.D. Shin, Verkley & Crous. New combinations - Parastagonospora avenae (A.B. Frank) Quaedvlieg, Verkley & Crous, Parastagonospora nodorum (Berk.) Quaedvlieg, Verkley & Crous, Phaeosphaeria papayae (Speg.) Quaedvlieg, Verkley & Crous, Pseudocercospora domingensis (Petr. & Cif.) Quaedvlieg, Verkley & Crous, Ruptoseptoria unedonis (Roberge ex Desm.) Quaedvlieg, Verkley & Crous, Septorioides pini-thunbergii (S. Kaneko) Quaedvlieg, Verkley & Crous, Sphaerulina abeliceae (Hiray.) Quaedvlieg, Verkley & Crous, Sphaerulina azaleae (Voglino) Quaedvlieg, Verkley & Crous, Sphaerulina berberidis (Niessl) Quaedvlieg, Verkley & Crous, Sphaerulina betulae (Pass.) Quaedvlieg, Verkley & Crous, Sphaerulina cercidis (Fr.) Quaedvlieg, Verkley & Crous, Sphaerulina menispermi (Thüm.) Quaedvlieg, Verkley & Crous, Sphaerulina musiva (Peck) Quaedvlieg, Verkley & Crous, Sphaerulina oxyacanthae (Kunze & J.C. Schmidt) Quaedvlieg, Verkley & Crous, Sphaerulina patriniae (Miura) Quaedvlieg, Verkley & Crous, Sphaerulina populicola (Peck) Quaedvlieg, Verkley & Crous, Sphaerulina quercicola (Desm.) Quaedvlieg, Verkley & Crous, Sphaerulina rhabdoclinis (Butin) Quaedvlieg, Verkley & Crous, Stromatoseptoria castaneicola (Desm.) Quaedvlieg, Verkley & Crous. Typifications: Epitypifications - Phaeosphaeria oryzae I. Miyake, Phaeoseptoria papayae Speg.; Neotypification - Hendersonia paludosa Sacc. & Speg.

Entities: Chemical

Keywords: Capnodiales; Multi-Locus Sequence Typing (MLST); Mycosphaerella; Mycosphaerellaceae; Phaeoseptoria; Phaeosphaeria; Phaeosphaeriaceae; Pleosporales; Septoria; Sphaerulina; Stagonospora; systematics

Year: 2013 PMID： 24014902 PMCID： PMC3713890 DOI： 10.3114/sim0017

Source DB: PubMed Journal: Stud Mycol ISSN： 0166-0616 Impact factor: 16.097

44 in total

1. MRBAYES: Bayesian inference of phylogenetic trees.

Authors: J P Huelsenbeck; F Ronquist
Journal: Bioinformatics Date: 2001-08 Impact factor: 6.937

2. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Authors: Kazutaka Katoh; Kazuharu Misawa; Kei-ichi Kuma; Takashi Miyata
Journal: Nucleic Acids Res Date: 2002-07-15 Impact factor: 16.971

3. Microfungi on Cercocarpus.

Authors: B C Sutton; F G Pollack
Journal: Mycopathol Mycol Appl Date: 1974-04-30

4. Phylogenetic analyses of Septoria species based on the ITS and LSU-D2 regions of nuclear ribosomal DNA.

Authors: Gerard J M Verkley; Mieke Starink-Willemse; Arien van Iperen; Edwin C A Abeln
Journal: Mycologia Date: 2004 May-Jun Impact factor: 2.696

5. Zymoseptoria ardabiliae and Z. pseudotritici, two progenitor species of the septoria tritici leaf blotch fungus Z. tritici (synonym: Mycosphaerella graminicola).

Authors: Eva H Stukenbrock; William Quaedvlieg; Mohammad Javan-Nikhah; Marcello Zala; Pedro W Crous; Bruce A McDonald
Journal: Mycologia Date: 2012-06-06 Impact factor: 2.696

6. Phylogenetic lineages in the Capnodiales.

Authors: P W Crous; C L Schoch; K D Hyde; A R Wood; C Gueidan; G S de Hoog; J Z Groenewald
Journal: Stud Mycol Date: 2009 Impact factor: 16.097

7. Neophaeosphaeria and Phaeosphaeriopsis, segregates of Paraphaeosphaeria.

Authors: Marcos P S Câmara; Annette W Ramaley; Lisa A Castlebury; Mary E Palm
Journal: Mycol Res Date: 2003-05

8. Delimiting Cladosporium from morphologically similar genera.

Authors: P W Crous; U Braun; K Schubert; J Z Groenewald
Journal: Stud Mycol Date: 2007 Impact factor: 16.097

9. Species concepts in Cercospora: spotting the weeds among the roses.

Authors: J Z Groenewald; C Nakashima; J Nishikawa; H-D Shin; J-H Park; A N Jama; M Groenewald; U Braun; P W Crous
Journal: Stud Mycol Date: 2013-06-30 Impact factor: 16.097

10. Phylogenetic lineages in Pseudocercospora.

Authors: P W Crous; U Braun; G C Hunter; M J Wingfield; G J M Verkley; H-D Shin; C Nakashima; J Z Groenewald
Journal: Stud Mycol Date: 2013-06-30 Impact factor: 16.097

75 in total

1. Fungal Planet description sheets: 154-213.

Authors: P W Crous; M J Wingfield; J Guarro; R Cheewangkoon; M van der Bank; W J Swart; A M Stchigel; J F Cano-Lira; J Roux; H Madrid; U Damm; A R Wood; L A Shuttleworth; C S Hodges; M Munster; M de Jesús Yáñez-Morales; L Zúñiga-Estrada; E M Cruywagen; G S de Hoog; C Silvera; J Najafzadeh; E M Davison; P J N Davison; M D Barrett; R L Barrett; D S Manamgoda; A M Minnis; N M Kleczewski; S L Flory; L A Castlebury; K Clay; K D Hyde; S N D Maússe-Sitoe; Shuaifei Chen; C Lechat; M Hairaud; L Lesage-Meessen; J Pawłowska; M Wilk; A Sliwińska-Wyrzychowska; M Mętrak; M Wrzosek; D Pavlic-Zupanc; H M Maleme; B Slippers; W P Mac Cormack; D I Archuby; N J Grünwald; M T Tellería; M Dueñas; M P Martín; S Marincowitz; Z W de Beer; C A Perez; J Gené; Y Marin-Felix; J Z Groenewald
Journal: Persoonia Date: 2013-11-26 Impact factor: 11.051

2. Fungal Planet description sheets: 214-280.

Authors: P W Crous; R G Shivas; W Quaedvlieg; M van der Bank; Y Zhang; B A Summerell; J Guarro; M J Wingfield; A R Wood; A C Alfenas; U Braun; J F Cano-Lira; D García; Y Marin-Felix; P Alvarado; J P Andrade; J Armengol; A Assefa; A den Breeÿen; I Camele; R Cheewangkoon; J T De Souza; T A Duong; F Esteve-Raventós; J Fournier; S Frisullo; J García-Jiménez; A Gardiennet; J Gené; M Hernández-Restrepo; Y Hirooka; D R Hospenthal; A King; C Lechat; L Lombard; S M Mang; P A S Marbach; S Marincowitz; Y Marin-Felix; N J Montaño-Mata; G Moreno; C A Perez; A M Pérez Sierra; J L Robertson; J Roux; E Rubio; R K Schumacher; A M Stchigel; D A Sutton; Y P Tan; E H Thompson; E van der Linde; A K Walker; D M Walker; B L Wickes; P T W Wong; J Z Groenewald
Journal: Persoonia Date: 2014-06-10 Impact factor: 11.051

3. Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae.

Authors: W Quaedvlieg; M Binder; J Z Groenewald; B A Summerell; A J Carnegie; T I Burgess; P W Crous
Journal: Persoonia Date: 2014-05-15 Impact factor: 11.051

4. Cercosporoid fungi (Mycosphaerellaceae) 2. Species on monocots (Acoraceae to Xyridaceae, excluding Poaceae).

Authors: Uwe Braun; Pedro W Crous; Chiharu Nakashima
Journal: IMA Fungus Date: 2014-11-25 Impact factor: 3.515

5. Genera of phytopathogenic fungi: GOPHY 1.

Authors: Y Marin-Felix; J Z Groenewald; L Cai; Q Chen; S Marincowitz; I Barnes; K Bensch; U Braun; E Camporesi; U Damm; Z W de Beer; A Dissanayake; J Edwards; A Giraldo; M Hernández-Restrepo; K D Hyde; R S Jayawardena; L Lombard; J Luangsa-Ard; A R McTaggart; A Y Rossman; M Sandoval-Denis; M Shen; R G Shivas; Y P Tan; E J van der Linde; M J Wingfield; A R Wood; J Q Zhang; Y Zhang; P W Crous
Journal: Stud Mycol Date: 2017-05-05 Impact factor: 16.097

6. Genera of phytopathogenic fungi: GOPHY 2.

Authors: Y Marin-Felix; M Hernández-Restrepo; M J Wingfield; A Akulov; A J Carnegie; R Cheewangkoon; D Gramaje; J Z Groenewald; V Guarnaccia; F Halleen; L Lombard; J Luangsa-Ard; S Marincowitz; A Moslemi; L Mostert; W Quaedvlieg; R K Schumacher; C F J Spies; R Thangavel; P W J Taylor; A M Wilson; B D Wingfield; A R Wood; P W Crous
Journal: Stud Mycol Date: 2018-05-01 Impact factor: 16.097

10. Unravelling unexplored diversity of cercosporoid fungi (Mycosphaerellaceae, Mycosphaerellales, Ascomycota) in tropical Africa.

Authors: Yalemwork Meswaet; Ralph Mangelsdorff; Nourou S Yorou; Meike Piepenbring
Journal: MycoKeys Date: 2021-06-17 Impact factor: 2.984