Literature DB >> 24014201

Feature Grouping and Selection Over an Undirected Graph.

Sen Yang1, Lei Yuan, Ying-Cheng Lai, Xiaotong Shen, Peter Wonka, Jieping Ye.   

Abstract

High-dimensional regression/classification continues to be an important and challenging problem, especially when features are highly correlated. Feature selection, combined with additional structure information on the features has been considered to be promising in promoting regression/classification performance. Graph-guided fused lasso (GFlasso) has recently been proposed to facilitate feature selection and graph structure exploitation, when features exhibit certain graph structures. However, the formulation in GFlasso relies on pairwise sample correlations to perform feature grouping, which could introduce additional estimation bias. In this paper, we propose three new feature grouping and selection methods to resolve this issue. The first method employs a convex function to penalize the pairwise l∞ norm of connected regression/classification coefficients, achieving simultaneous feature grouping and selection. The second method improves the first one by utilizing a non-convex function to reduce the estimation bias. The third one is the extension of the second method using a truncated l1 regularization to further reduce the estimation bias. The proposed methods combine feature grouping and feature selection to enhance estimation accuracy. We employ the alternating direction method of multipliers (ADMM) and difference of convex functions (DC) programming to solve the proposed formulations. Our experimental results on synthetic data and two real datasets demonstrate the effectiveness of the proposed methods.

Entities:  

Keywords:  Feature grouping; classification; feature selection; l1 regularization; regression; undirected graph

Year:  2012        PMID: 24014201      PMCID: PMC3763852          DOI: 10.1145/2339530.2339675

Source DB:  PubMed          Journal:  KDD        ISSN: 2154-817X


  9 in total

1.  Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain.

Authors:  N Tzourio-Mazoyer; B Landeau; D Papathanassiou; F Crivello; O Etard; N Delcroix; B Mazoyer; M Joliot
Journal:  Neuroimage       Date:  2002-01       Impact factor: 6.556

2.  Simultaneous regression shrinkage, variable selection, and supervised clustering of predictors with OSCAR.

Authors:  Howard D Bondell; Brian J Reich
Journal:  Biometrics       Date:  2007-06-30       Impact factor: 2.571

3.  Network-constrained regularization and variable selection for analysis of genomic data.

Authors:  Caiyan Li; Hongzhe Li
Journal:  Bioinformatics       Date:  2008-03-01       Impact factor: 6.937

4.  Simultaneous supervised clustering and feature selection over a graph.

Authors:  Xiaotong Shen; Hsin-Cheng Huang; Wei Pan
Journal:  Biometrika       Date:  2012-10-18       Impact factor: 2.445

5.  Efficient sparse modeling with automatic feature grouping.

Authors:  Leon Wenliang Zhong; James T Kwok
Journal:  IEEE Trans Neural Netw Learn Syst       Date:  2012-09       Impact factor: 10.451

6.  Grouping pursuit through a regularization solution surface.

Authors:  Xiaotong Shen; Hsin-Cheng Huang
Journal:  J Am Stat Assoc       Date:  2010-06-01       Impact factor: 5.033

7.  Simultaneous grouping pursuit and feature selection over an undirected graph.

Authors:  Yunzhang Zhu; Xiaotong Shen; Wei Pan
Journal:  J Am Stat Assoc       Date:  2013-01-01       Impact factor: 5.033

8.  Statistical estimation of correlated genome associations to a quantitative trait network.

Authors:  Seyoung Kim; Eric P Xing
Journal:  PLoS Genet       Date:  2009-08-14       Impact factor: 5.917

9.  Network-based classification of breast cancer metastasis.

Authors:  Han-Yu Chuang; Eunjung Lee; Yu-Tsueng Liu; Doheon Lee; Trey Ideker
Journal:  Mol Syst Biol       Date:  2007-10-16       Impact factor: 11.429

  9 in total
  17 in total

1.  Graph-guided joint prediction of class label and clinical scores for the Alzheimer's disease.

Authors:  Guan Yu; Yufeng Liu; Dinggang Shen
Journal:  Brain Struct Funct       Date:  2015-10-17       Impact factor: 3.270

2.  Structured sparse canonical correlation analysis for brain imaging genetics: an improved GraphNet method.

Authors:  Lei Du; Heng Huang; Jingwen Yan; Sungeun Kim; Shannon L Risacher; Mark Inlow; Jason H Moore; Andrew J Saykin; Li Shen
Journal:  Bioinformatics       Date:  2016-01-21       Impact factor: 6.937

3.  Graph-based sparse linear discriminant analysis for high-dimensional classification.

Authors:  Jianyu Liu; Guan Yu; Yufeng Liu
Journal:  J Multivar Anal       Date:  2018-12-17       Impact factor: 1.473

4.  A novel SCCA approach via truncated ℓ1-norm and truncated group lasso for brain imaging genetics.

Authors:  Lei Du; Kefei Liu; Tuo Zhang; Xiaohui Yao; Jingwen Yan; Shannon L Risacher; Junwei Han; Lei Guo; Andrew J Saykin; Li Shen
Journal:  Bioinformatics       Date:  2018-01-15       Impact factor: 6.937

5.  Sparse Regression Incorporating Graphical Structure among Predictors.

Authors:  Guan Yu; Yufeng Liu
Journal:  J Am Stat Assoc       Date:  2016-08-18       Impact factor: 5.033

6.  Sparse Methods for Biomedical Data.

Authors:  Jieping Ye; Jun Liu
Journal:  SIGKDD Explor       Date:  2012-06-01

7.  Identifying Associations Between Brain Imaging Phenotypes and Genetic Factors via A Novel Structured SCCA Approach.

Authors:  Lei Du; Tuo Zhang; Kefei Liu; Jingwen Yan; Xiaohui Yao; Shannon L Risacher; Andrew J Saykin; Junwei Han; Lei Guo; Li Shen
Journal:  Inf Process Med Imaging       Date:  2017-05-23

8.  Penalized Regression and Risk Prediction in Genome-Wide Association Studies.

Authors:  Erin Austin; Wei Pan; Xiaotong Shen
Journal:  Stat Anal Data Min       Date:  2013-08-01       Impact factor: 1.051

9.  Fused Lasso Approach in Regression Coefficients Clustering - Learning Parameter Heterogeneity in Data Integration.

Authors:  Lu Tang; Peter X K Song
Journal:  J Mach Learn Res       Date:  2016       Impact factor: 3.654

10.  Sparse Canonical Correlation Analysis via Truncated 1-norm with Application to Brain Imaging Genetics.

Authors:  Lei Du; Tuo Zhang; Kefei Liu; Xiaohui Yao; Jingwen Yan; Shannon L Risacher; Lei Guo; Andrew J Saykin; Li Shen
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2017-01-19
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.