Literature DB >> 24013102

Enrichment of target sequences for next-generation sequencing applications in research and diagnostics.

Janine Altmüller, Birgit S Budde, Peter Nürnberg.   

Abstract

Abstract Targeted re-sequencing such as gene panel sequencing (GPS) has become very popular in medical genetics, both for research projects and in diagnostic settings. The technical principles of the different enrichment methods have been reviewed several times before; however, new enrichment products are constantly entering the market, and researchers are often puzzled about the requirement to take decisions about long-term commitments, both for the enrichment product and the sequencing technology. This review summarizes important considerations for the experimental design and provides helpful recommendations in choosing the best sequencing strategy for various research projects and diagnostic applications.

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Year:  2014        PMID: 24013102     DOI: 10.1515/hsz-2013-0199

Source DB:  PubMed          Journal:  Biol Chem        ISSN: 1431-6730            Impact factor:   3.915


  14 in total

Review 1.  The Role of Next-Generation Sequencing in Pharmacogenetics and Pharmacogenomics.

Authors:  Ute I Schwarz; Markus Gulilat; Richard B Kim
Journal:  Cold Spring Harb Perspect Med       Date:  2019-02-01       Impact factor: 6.915

2.  Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping.

Authors:  Paula J P de Vree; Elzo de Wit; Mehmet Yilmaz; Monique van de Heijning; Petra Klous; Marjon J A M Verstegen; Yi Wan; Hans Teunissen; Peter H L Krijger; Geert Geeven; Paul P Eijk; Daoud Sie; Bauke Ylstra; Lorette O M Hulsman; Marieke F van Dooren; Laura J C M van Zutven; Ans van den Ouweland; Sjef Verbeek; Ko Willems van Dijk; Marion Cornelissen; Atze T Das; Ben Berkhout; Birgit Sikkema-Raddatz; Eva van den Berg; Pieter van der Vlies; Desiree Weening; Johan T den Dunnen; Magdalena Matusiak; Mohamed Lamkanfi; Marjolijn J L Ligtenberg; Petra ter Brugge; Jos Jonkers; John A Foekens; John W Martens; Rob van der Luijt; Hans Kristian Ploos van Amstel; Max van Min; Erik Splinter; Wouter de Laat
Journal:  Nat Biotechnol       Date:  2014-08-17       Impact factor: 54.908

3.  Sensitivity of whole exome sequencing in detecting infantile- and late-onset Pompe disease.

Authors:  Mari Mori; Gloria Haskell; Zoheb Kazi; Xiaolin Zhu; Stephanie M DeArmey; Jennifer L Goldstein; Deeksha Bali; Catherine Rehder; Elizabeth T Cirulli; Priya S Kishnani
Journal:  Mol Genet Metab       Date:  2017-10-17       Impact factor: 4.797

4.  Discovery of rare variants implicated in schizophrenia using next-generation sequencing.

Authors:  Raina Rhoades; Fatimah Jackson; Shaolei Teng
Journal:  J Transl Genet Genom       Date:  2019-01-20

5.  Identifying genomic changes associated with insecticide resistance in the dengue mosquito Aedes aegypti by deep targeted sequencing.

Authors:  Frederic Faucon; Isabelle Dusfour; Thierry Gaude; Vincent Navratil; Frederic Boyer; Fabrice Chandre; Patcharawan Sirisopa; Kanutcharee Thanispong; Waraporn Juntarajumnong; Rodolphe Poupardin; Theeraphap Chareonviriyaphap; Romain Girod; Vincent Corbel; Stephane Reynaud; Jean-Philippe David
Journal:  Genome Res       Date:  2015-07-23       Impact factor: 9.043

Review 6.  Evolution of genetic techniques: past, present, and beyond.

Authors:  Asude Alpman Durmaz; Emin Karaca; Urszula Demkow; Gokce Toruner; Jacqueline Schoumans; Ozgur Cogulu
Journal:  Biomed Res Int       Date:  2015-03-22       Impact factor: 3.411

7.  The next generation of target capture technologies - large DNA fragment enrichment and sequencing determines regional genomic variation of high complexity.

Authors:  Johannes Dapprich; Deborah Ferriola; Kate Mackiewicz; Peter M Clark; Eric Rappaport; Monica D'Arcy; Ariella Sasson; Xiaowu Gai; Jonathan Schug; Klaus H Kaestner; Dimitri Monos
Journal:  BMC Genomics       Date:  2016-07-09       Impact factor: 3.969

8.  Molecular Inversion Probes for targeted resequencing in non-model organisms.

Authors:  M Niedzicka; A Fijarczyk; K Dudek; M Stuglik; W Babik
Journal:  Sci Rep       Date:  2016-04-05       Impact factor: 4.379

9.  Improving the management of Inherited Retinal Dystrophies by targeted sequencing of a population-specific gene panel.

Authors:  Nereida Bravo-Gil; Cristina Méndez-Vidal; Laura Romero-Pérez; María González-del Pozo; Enrique Rodríguez-de la Rúa; Joaquín Dopazo; Salud Borrego; Guillermo Antiñolo
Journal:  Sci Rep       Date:  2016-04-01       Impact factor: 4.379

10.  A targeted next-generation sequencing method for identifying clinically relevant mutation profiles in lung adenocarcinoma.

Authors:  Di Shao; Yongping Lin; Jilong Liu; Liang Wan; Zu Liu; Shaomin Cheng; Lingna Fei; Rongqing Deng; Jian Wang; Xi Chen; Liping Liu; Xia Gu; Wenhua Liang; Ping He; Jun Wang; Mingzhi Ye; Jianxing He
Journal:  Sci Rep       Date:  2016-03-03       Impact factor: 4.379

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