Literature DB >> 24001620

Epigenetic profiles as defined signatures of xenobiotic exposure.

John P Thomson1, Jonathan G Moggs2, C Roland Wolf3, Richard R Meehan4.   

Abstract

With the advent of high resolution sequencing technologies there has been increasing interest in the study of genome-wide epigenetic modification patterns that govern the underlying gene expression events of a particular cell or tissue type. There is now mounting evidence that perturbations to the epigenetic landscape occur during a host of cellular processes including normal proliferation/differentiation and aberrant outcomes such as carcinogenesis. Furthermore, epigenetic perturbations have been associated with exposure to a range of drugs and toxicants, including non-genotoxic carcinogens (NGCs). Although a variety of epigenetic modifications induced by NGCs have been studied previously, recent genome-wide integrated epigenomic and transcriptomic studies reveal for the first time the extent and dynamic nature of the epigenetic perturbations resulting from xenobiotic exposure. The interrogation and integration of one such epigenetic mark, the newly discovered 5-hydroxymethylcytosine (5hmC) modification, reveals that drug treatment associated perturbations of the epigenome can result in unique epigenetic signatures. This review focuses on how recent advances in the field of epigenetics can enhance our mechanistic understanding of xenobiotic exposure and provide novel safety biomarkers. Crown
Copyright © 2013. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  5-hydroxymethylcytosine; 5-methylcytosine; 5hmC; 5mC; DNA methylation; Epigenetics; cancer; chemical safety

Mesh:

Substances:

Year:  2013        PMID: 24001620     DOI: 10.1016/j.mrgentox.2013.08.007

Source DB:  PubMed          Journal:  Mutat Res Genet Toxicol Environ Mutagen        ISSN: 1383-5718            Impact factor:   2.873


  19 in total

1.  Widespread epigenetic changes to the enhancer landscape of mouse liver induced by a specific xenobiotic agonist ligand of the nuclear receptor CAR.

Authors:  Andy Rampersaud; Nicholas J Lodato; Aram Shin; David J Waxman
Journal:  Toxicol Sci       Date:  2019-06-24       Impact factor: 4.849

2.  Incorporation of an Epigenetic Evaluation into Safety Assessment: What we First Need to Know.

Authors:  Jay I Goodman
Journal:  Curr Opin Toxicol       Date:  2017-05-05

3.  Dose-response analysis of epigenetic, metabolic, and apical endpoints after short-term exposure to experimental hepatotoxicants.

Authors:  Isabelle R Miousse; Lynea A Murphy; Haixia Lin; Melissa R Schisler; Jinchun Sun; Marie-Cecile G Chalbot; Radhakrishna Sura; Kamin Johnson; Matthew J LeBaron; Ilias G Kavouras; Laura K Schnackenberg; Richard D Beger; Reza J Rasoulpour; Igor Koturbash
Journal:  Food Chem Toxicol       Date:  2017-05-08       Impact factor: 6.023

4.  Gene-specific promoter methylation is associated with micronuclei frequency in urothelial cells from individuals exposed to organic solvents and paints.

Authors:  L S Hoyos-Giraldo; L F Escobar-Hoyos; D Saavedra-Trujillo; I Reyes-Carvajal; A Muñoz; E Londoño-Velasco; A Tello; N Cajas-Salazar; M Ruíz; S Carvajal; R M Santella
Journal:  J Expo Sci Environ Epidemiol       Date:  2015-05-20       Impact factor: 5.563

5.  Hydroxymethylation as a Novel Environmental Biosensor.

Authors:  T Dao; R Y S Cheng; M P Revelo; W Mitzner; Wy Tang
Journal:  Curr Environ Health Rep       Date:  2014-03-01

6.  Epigenetic events determine tissue-specific toxicity of inhalational exposure to the genotoxic chemical 1,3-butadiene in male C57BL/6J mice.

Authors:  Grace Chappell; Tetyana Kobets; Bridget O'Brien; Natalia Tretyakova; Dewakar Sangaraju; Oksana Kosyk; Kenneth G Sexton; Wanda Bodnar; Igor P Pogribny; Ivan Rusyn
Journal:  Toxicol Sci       Date:  2014-09-18       Impact factor: 4.849

Review 7.  Drug-induced liver injury: Advances in mechanistic understanding that will inform risk management.

Authors:  M Mosedale; P B Watkins
Journal:  Clin Pharmacol Ther       Date:  2017-01-11       Impact factor: 6.875

8.  Impact of CAR Agonist Ligand TCPOBOP on Mouse Liver Chromatin Accessibility.

Authors:  Nicholas J Lodato; Andy Rampersaud; David J Waxman
Journal:  Toxicol Sci       Date:  2018-07-01       Impact factor: 4.849

Review 9.  tRNA modifications regulate translation during cellular stress.

Authors:  Chen Gu; Thomas J Begley; Peter C Dedon
Journal:  FEBS Lett       Date:  2014-10-07       Impact factor: 4.124

10.  DNA immunoprecipitation semiconductor sequencing (DIP-SC-seq) as a rapid method to generate genome wide epigenetic signatures.

Authors:  John P Thomson; Angie Fawkes; Raffaele Ottaviano; Jennifer M Hunter; Ruchi Shukla; Heidi K Mjoseng; Richard Clark; Audrey Coutts; Lee Murphy; Richard R Meehan
Journal:  Sci Rep       Date:  2015-05-14       Impact factor: 4.379

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