Literature DB >> 24001002

Are there unequivocal criteria to label a given protein as a toxin? Permissive versus conservative annotation processes.

Yves Terrat, Frédéric Ducancel.   

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Year:  2013        PMID： 24001002      PMCID： PMC4054097          DOI： 10.1186/gb-2013-14-9-406

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


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  28 in total

1.  The tale of a resting gland: transcriptome of a replete venom gland from the scorpion Hottentotta judaicus.

Authors:  David Morgenstern; Bettina H Rohde; Glenn F King; Tzachy Tal; Daniel Sher; Eliahu Zlotkin
Journal:  Toxicon       Date:  2011-02-15       Impact factor: 3.033

2.  Identification of novel proteins from the venom of a cryptic snake Drysdalia coronoides by a combined transcriptomics and proteomics approach.

Authors:  Shifali Tiwari Chatrath; Alex Chapeaurouge; Qingsong Lin; Teck Kwang Lim; Nathan Dunstan; Peter Mirtschin; Prakash P Kumar; R Manjunatha Kini
Journal:  J Proteome Res       Date:  2011-01-05       Impact factor: 4.466

3.  A high-throughput venom-gland transcriptome for the Eastern Diamondback Rattlesnake (Crotalus adamanteus) and evidence for pervasive positive selection across toxin classes.

Authors:  Darin R Rokyta; Kenneth P Wray; Alan R Lemmon; Emily Moriarty Lemmon; S Brian Caudle
Journal:  Toxicon       Date:  2011-01-19       Impact factor: 3.033

4.  The endothelin system: evolution of vertebrate-specific ligand-receptor interactions by three rounds of genome duplication.

Authors:  Ingo Braasch; Jean-Nicolas Volff; Manfred Schartl
Journal:  Mol Biol Evol       Date:  2009-01-27       Impact factor: 16.240

5.  Novel venom gene discovery in the platypus.

Authors:  Camilla M Whittington; Anthony T Papenfuss; Devin P Locke; Elaine R Mardis; Richard K Wilson; Sahar Abubucker; Makedonka Mitreva; Emily S W Wong; Arthur L Hsu; Philip W Kuchel; Katherine Belov; Wesley C Warren
Journal:  Genome Biol       Date:  2010-09-29       Impact factor: 13.583

6.  Defensins and the convergent evolution of platypus and reptile venom genes.

Authors:  Camilla M Whittington; Anthony T Papenfuss; Paramjit Bansal; Allan M Torres; Emily S W Wong; Janine E Deakin; Tina Graves; Amber Alsop; Kyriena Schatzkamer; Colin Kremitzki; Chris P Ponting; Peter Temple-Smith; Wesley C Warren; Philip W Kuchel; Katherine Belov
Journal:  Genome Res       Date:  2008-05-07       Impact factor: 9.043

7.  Characterization of the Conus bullatus genome and its venom-duct transcriptome.

Authors:  Hao Hu; Pradip K Bandyopadhyay; Baldomero M Olivera; Mark Yandell
Journal:  BMC Genomics       Date:  2011-01-25       Impact factor: 3.969

8.  A transcriptomic analysis of gene expression in the venom gland of the snake Bothrops alternatus (urutu).

Authors:  Kiara C Cardoso; Márcio J Da Silva; Gustavo G L Costa; Tatiana T Torres; Luiz Eduardo V Del Bem; Ramon O Vidal; Marcelo Menossi; Stephen Hyslop
Journal:  BMC Genomics       Date:  2010-10-26       Impact factor: 3.969

9.  Venom gland transcriptomes of two elapid snakes (Bungarus multicinctus and Naja atra) and evolution of toxin genes.

Authors:  Yu Jiang; Yan Li; Wenhui Lee; Xun Xu; Yue Zhang; Ruoping Zhao; Yun Zhang; Wen Wang
Journal:  BMC Genomics       Date:  2011-01-03       Impact factor: 3.969

10.  Comparative venom gland transcriptome analysis of the scorpion Lychas mucronatus reveals intraspecific toxic gene diversity and new venomous components.

Authors:  Zhao Ruiming; Ma Yibao; He Yawen; Di Zhiyong; Wu Yingliang; Cao Zhijian; Li Wenxin
Journal:  BMC Genomics       Date:  2010-07-28       Impact factor: 3.969
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  2 in total

1.  Rapid Radiations and the Race to Redundancy: An Investigation of the Evolution of Australian Elapid Snake Venoms.

Authors:  Timothy N W Jackson; Ivan Koludarov; Syed A Ali; James Dobson; Christina N Zdenek; Daniel Dashevsky; Bianca Op den Brouw; Paul P Masci; Amanda Nouwens; Peter Josh; Jonathan Goldenberg; Vittoria Cipriani; Chris Hay; Iwan Hendrikx; Nathan Dunstan; Luke Allen; Bryan G Fry
Journal:  Toxins (Basel)       Date:  2016-10-26       Impact factor: 4.546

2.  Venomix: a simple bioinformatic pipeline for identifying and characterizing toxin gene candidates from transcriptomic data.

Authors:  Jason Macrander; Jyothirmayi Panda; Daniel Janies; Marymegan Daly; Adam M Reitzel
Journal:  PeerJ       Date:  2018-07-31       Impact factor: 2.984
  2 in total

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