Literature DB >> 23997808

Materials by Design: Merging Proteins and Music.

Joyce Y Wong1, John McDonald, Micki Taylor-Pinney, David I Spivak, David L Kaplan, Markus J Buehler.   

Abstract

Tailored materials with tunable properties are crucial for applications as biomaterials, for drug delivery, as functional coatings, or as lightweight composites. An emerging paradigm in designing such materials is the construction of hierarchical assemblies of simple building blocks into complex architectures with superior properties. We review this approach in a case study of silk, a genetically programmable and processable biomaterial, which, in its natural role serves as a versatile protein fiber with hierarchical organization to provide structural support, prey procurement or protection of eggs. Through an abstraction of knowledge from the physical system, silk, to a mathematical model using category theory, we describe how the mechanism of spinning fibers from proteins can be translated into music through a process that assigns a set of rules that governs the construction of the system. This technique allows one to express the structure, mechanisms and properties of the 'material' in a very different domain, 'music'. The integration of science and art through categorization of structure-property relationships presents a novel paradigm to create new bioinspired materials, through the translation of structures and mechanisms from distinct hierarchical systems and in the context of the limited number of building blocks that universally governs these systems.

Entities:  

Keywords:  Nanotechnology; arts; biology; design; experiment; manufacturing; music; nanomechanics; protein; theory

Year:  2012        PMID: 23997808      PMCID: PMC3752788          DOI: 10.1016/j.nantod.2012.09.001

Source DB:  PubMed          Journal:  Nano Today        ISSN: 1748-0132            Impact factor:   20.722


  13 in total

1.  Nonlinear material behaviour of spider silk yields robust webs.

Authors:  Steven W Cranford; Anna Tarakanova; Nicola M Pugno; Markus J Buehler
Journal:  Nature       Date:  2012-02-01       Impact factor: 49.962

Review 2.  Spider silk: understanding the structure-function relationship of a natural fiber.

Authors:  Martin Humenik; Thomas Scheibel; Andrew Smith
Journal:  Prog Mol Biol Transl Sci       Date:  2011       Impact factor: 3.622

3.  Molecular and nanostructural mechanisms of deformation, strength and toughness of spider silk fibrils.

Authors:  Andrea Nova; Sinan Keten; Nicola M Pugno; Alberto Redaelli; Markus J Buehler
Journal:  Nano Lett       Date:  2010-07-14       Impact factor: 11.189

4.  Assembly mechanism of recombinant spider silk proteins.

Authors:  S Rammensee; U Slotta; T Scheibel; A R Bausch
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-29       Impact factor: 11.205

Review 5.  Invited review the coiled coil silk of bees, ants, and hornets.

Authors:  Tara D Sutherland; Sarah Weisman; Andrew A Walker; Stephen T Mudie
Journal:  Biopolymers       Date:  2011-08-09       Impact factor: 2.505

Review 6.  Hierarchical structures made of proteins. The complex architecture of spider webs and their constituent silk proteins.

Authors:  Markus Heim; Lin Römer; Thomas Scheibel
Journal:  Chem Soc Rev       Date:  2009-10-16       Impact factor: 54.564

Review 7.  New opportunities for an ancient material.

Authors:  Fiorenzo G Omenetto; David L Kaplan
Journal:  Science       Date:  2010-07-30       Impact factor: 47.728

Review 8.  A review of combined experimental and computational procedures for assessing biopolymer structure-process-property relationships.

Authors:  Greta Gronau; Sreevidhya T Krishnaji; Michelle E Kinahan; Tristan Giesa; Joyce Y Wong; David L Kaplan; Markus J Buehler
Journal:  Biomaterials       Date:  2012-08-28       Impact factor: 12.479

9.  Tunable silk: using microfluidics to fabricate silk fibers with controllable properties.

Authors:  Michelle E Kinahan; Emmanouela Filippidi; Sarah Köster; Xiao Hu; Heather M Evans; Thomas Pfohl; David L Kaplan; Joyce Wong
Journal:  Biomacromolecules       Date:  2011-04-11       Impact factor: 6.988

10.  Conversion of amino-acid sequence in proteins to classical music: search for auditory patterns.

Authors:  Rie Takahashi; Jeffrey H Miller
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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  6 in total

1.  Silk-Its Mysteries, How It Is Made, and How It Is Used.

Authors:  Davoud Ebrahimi; Olena Tokareva; Nae Gyune Rim; Joyce Y Wong; David L Kaplan; Markus J Buehler
Journal:  ACS Biomater Sci Eng       Date:  2015-08-24

2.  Effect of sequence features on assembly of spider silk block copolymers.

Authors:  Olena S Tokareva; Shangchao Lin; Matthew M Jacobsen; Wenwen Huang; Daniel Rizzo; David Li; Marc Simon; Cristian Staii; Peggy Cebe; Joyce Y Wong; Markus J Buehler; David L Kaplan
Journal:  J Struct Biol       Date:  2014-03-12       Impact factor: 2.867

3.  Integrated multiscale biomaterials experiment and modelling: a perspective.

Authors:  Markus J Buehler; Guy M Genin
Journal:  Interface Focus       Date:  2016-02-06       Impact factor: 3.906

4.  Materials by Design-A Perspective From Atoms to Structures.

Authors:  Markus J Buehler
Journal:  MRS Bull       Date:  2013-02       Impact factor: 6.578

Review 5.  Synergistic Integration of Experimental and Simulation Approaches for the de Novo Design of Silk-Based Materials.

Authors:  Wenwen Huang; Davoud Ebrahimi; Nina Dinjaski; Anna Tarakanova; Markus J Buehler; Joyce Y Wong; David L Kaplan
Journal:  Acc Chem Res       Date:  2017-02-13       Impact factor: 24.466

6.  Sonification based de novo protein design using artificial intelligence, structure prediction, and analysis using molecular modeling.

Authors:  Chi-Hua Yu; Markus J Buehler
Journal:  APL Bioeng       Date:  2020-03-17
  6 in total

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