Literature DB >> 23982993

Expanding the scope of site-specific recombinases for genetic and metabolic engineering.

Thomas Gaj1, Shannon J Sirk, Carlos F Barbas.   

Abstract

Site-specific recombinases are tremendously valuable tools for basic research and genetic engineering. By promoting high-fidelity DNA modifications, site-specific recombination systems have empowered researchers with unprecedented control over diverse biological functions, enabling countless insights into cellular structure and function. The rigid target specificities of many sites-specific recombinases, however, have limited their adoption in fields that require highly flexible recognition abilities. As a result, intense effort has been directed toward altering the properties of site-specific recombination systems by protein engineering. Here, we review key developments in the rational design and directed molecular evolution of site-specific recombinases, highlighting the numerous applications of these enzymes across diverse fields of study.
© 2013 Wiley Periodicals, Inc.

Entities:  

Keywords:  genome engineering; protein engineering; recombinase

Mesh:

Substances:

Year:  2013        PMID: 23982993      PMCID: PMC4097888          DOI: 10.1002/bit.25096

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  153 in total

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2.  A structural basis for allosteric control of DNA recombination by lambda integrase.

Authors:  Tapan Biswas; Hideki Aihara; Marta Radman-Livaja; David Filman; Arthur Landy; Tom Ellenberger
Journal:  Nature       Date:  2005-06-23       Impact factor: 49.962

3.  An unbiased genome-wide analysis of zinc-finger nuclease specificity.

Authors:  Richard Gabriel; Angelo Lombardo; Anne Arens; Jeffrey C Miller; Pietro Genovese; Christine Kaeppel; Ali Nowrouzi; Cynthia C Bartholomae; Jianbin Wang; Geoffrey Friedman; Michael C Holmes; Philip D Gregory; Hanno Glimm; Manfred Schmidt; Luigi Naldini; Christof von Kalle
Journal:  Nat Biotechnol       Date:  2011-08-07       Impact factor: 54.908

4.  Mechanism of strand cleavage and exchange in the Cre-lox site-specific recombination system.

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Journal:  J Mol Biol       Date:  1985-02-05       Impact factor: 5.469

5.  Recombination within the yeast plasmid 2mu circle is site-specific.

Authors:  J R Broach; V R Guarascio; M Jayaram
Journal:  Cell       Date:  1982-05       Impact factor: 41.582

6.  Cleavage of the site-specific recombination protein gamma delta resolvase: the smaller of two fragments binds DNA specifically.

Authors:  S S Abdel-Meguid; N D Grindley; N S Templeton; T A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

7.  P1 site-specific recombination: nucleotide sequence of the recombining sites.

Authors:  R H Hoess; M Ziese; N Sternberg
Journal:  Proc Natl Acad Sci U S A       Date:  1982-06       Impact factor: 11.205

8.  The crystal structure of TAL effector PthXo1 bound to its DNA target.

Authors:  Amanda Nga-Sze Mak; Philip Bradley; Raul A Cernadas; Adam J Bogdanove; Barry L Stoddard
Journal:  Science       Date:  2012-01-05       Impact factor: 47.728

9.  Structural basis for sequence-specific recognition of DNA by TAL effectors.

Authors:  Dong Deng; Chuangye Yan; Xiaojing Pan; Magdy Mahfouz; Jiawei Wang; Jian-Kang Zhu; Yigong Shi; Nieng Yan
Journal:  Science       Date:  2012-01-05       Impact factor: 47.728

10.  Targeted plasmid integration into the human genome by an engineered zinc-finger recombinase.

Authors:  Charles A Gersbach; Thomas Gaj; Russell M Gordley; Andrew C Mercer; Carlos F Barbas
Journal:  Nucleic Acids Res       Date:  2011-06-07       Impact factor: 16.971

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  23 in total

1.  Creating cancer translocations in human cells using Cas9 DSBs and nCas9 paired nicks.

Authors:  Benjamin Renouf; Marion Piganeau; Hind Ghezraoui; Maria Jasin; Erika Brunet
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  RNA-Guided Recombinase-Cas9 Fusion Targets Genomic DNA Deletion and Integration.

Authors:  Kylie Standage-Beier; Nicholas Brookhouser; Parithi Balachandran; Qi Zhang; David A Brafman; Xiao Wang
Journal:  CRISPR J       Date:  2019-08

3.  A photoactivatable Cre-loxP recombination system for optogenetic genome engineering.

Authors:  Fuun Kawano; Risako Okazaki; Masayuki Yazawa; Moritoshi Sato
Journal:  Nat Chem Biol       Date:  2016-10-10       Impact factor: 15.040

Review 4.  Digital and analog gene circuits for biotechnology.

Authors:  Nathaniel Roquet; Timothy K Lu
Journal:  Biotechnol J       Date:  2014-02-20       Impact factor: 4.677

5.  Target-specific variants of Flp recombinase mediate genome engineering reactions in mammalian cells.

Authors:  Riddhi Shah; Feng Li; Eugenia Voziyanova; Yuri Voziyanov
Journal:  FEBS J       Date:  2015-07-01       Impact factor: 5.542

6.  Crystal structure of an engineered, HIV-specific recombinase for removal of integrated proviral DNA.

Authors:  Gretchen Meinke; Janet Karpinski; Frank Buchholz; Andrew Bohm
Journal:  Nucleic Acids Res       Date:  2017-09-19       Impact factor: 16.971

7.  The Development of TALE Nucleases for Biotechnology.

Authors:  David G Ousterout; Charles A Gersbach
Journal:  Methods Mol Biol       Date:  2016

Review 8.  Genome engineering: Drosophila melanogaster and beyond.

Authors:  Koen J T Venken; Alejandro Sarrion-Perdigones; Paul J Vandeventer; Nicholas S Abel; Audrey E Christiansen; Kristi L Hoffman
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-10-08       Impact factor: 5.814

9.  A programmable Cas9-serine recombinase fusion protein that operates on DNA sequences in mammalian cells.

Authors:  Brian Chaikind; Jeffrey L Bessen; David B Thompson; Johnny H Hu; David R Liu
Journal:  Nucleic Acids Res       Date:  2016-08-11       Impact factor: 16.971

10.  Improved cell-penetrating zinc-finger nuclease proteins for precision genome engineering.

Authors:  Jia Liu; Thomas Gaj; Mark C Wallen; Carlos F Barbas
Journal:  Mol Ther Nucleic Acids       Date:  2015-03-10       Impact factor: 10.183

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