| Literature DB >> 23977005 |
Shan Li1, Cuiju Mo, Qiliu Peng, Xiaonan Kang, Chun Sun, Kai Jiang, Li Huang, Yu Lu, Jingzhe Sui, Xue Qin, Yinkun Liu.
Abstract
BACKGROUND ANDEntities:
Mesh:
Substances:
Year: 2013 PMID: 23977005 PMCID: PMC3748092 DOI: 10.1371/journal.pone.0071273
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
List of primers used for qRT-PCR.
| Gene | Primer sequences |
|
| Forward: 5′-GAATGACAACAAGCCCGAAT-3′Reverse: |
|
| Forward: 5′-GGTGGAGGAGAAGAAGACCAG-3′Reverse: |
|
| Forward: 5′-TGGTTGCTTCAAGGACACAT-3′Reverse: |
|
| Forward: 5′-GCTGCAGGACTCAATCCAGA-3′Reverse: |
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| Forward: 5′-CCCAACTCCCAGACACCTC-3′Reverse: |
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| Forward: 5′-GCCTCACCTTGGGAGTTATC-3′Reverse: |
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| Forward: 5′- GCTGCCCAACTGTAGGAGAC-3′Reverse: |
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| Forward: 5′- CAGATAACCCGTGGGGATAG-3′Reverse: |
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| Forward: 5′- AGCGAACACTCATCTTGGAA-3′Reverse: |
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| Forward: 5′- CATGTACGTTGCTATCCAGGC -3′Reverse: |
Lectins used in the array and their specific binding carbohydrates.
| Number | Lectins | specific binding carbohydrates |
|
| Aleuria aurantia lectinn (AAL) | Terminal αFuc and ± Sia-Le |
|
| Agaricus bisporus lectin (ABL) | Galβ1-3GalNAcα1-Ser/Thr (T-Antigen),Siaα2-3 (6) Galβ-1-3GalNAcα1-Ser/Thr |
|
| Amaranthus caudatus lectin (ACL) | galactosyl (b-1,3) N-acetylgalactosamine structure |
|
| Bauhinia purpurea lectin (BPL) | galactosyl (b-1,3) N-acetylgalactosamine structures |
|
| Bandeiraea simplicifolia lectin (BSL) | α-D-galactosyl residues, N-acetyl-α-D-galactosaminyl residues |
|
| Caragana arborescens lectin (CAL) | ForssmanpentasaccharidE |
|
| Codium fragile lectin (CFL) | N-acetyl-D-galatosamine |
|
| Concanavalin A (Con A) | α-man (inhibited by presence of bisecting GlcNAc) biantennary complex-type oligosaccharides |
|
| Cytisus scoparius Lectin (CSL) | D-galactose and by N-acetyl-D-galactosamine |
|
| Dolichos biflorus agglutinin (DBA) | a-linked N-acetylgalactosamine |
|
| Datura stramonium agglutinin (DSA) | >Biantennary,(G1cNAc)n,polyLacNAc and LacNAc (1NA3,NA4) |
|
| Erythrina cristagalli lectin (ECL) | galactosyl (b -1,4) N-acetylglucosamine |
|
| Euonymus europaeus lectin (EEL) | galactosyl (a-1,3) galactose |
|
| Galanthus nivalis lectin (GNL) | (a-1,3) mannose residues |
|
| Griffonia simplicifolia lectin I (GSL I) | a-N-acetylgalactosamine residues, a-galactose residues |
|
| GSL I – isolectin B4 (GSL1b4) | a-N-acetylgalactosamine residues, a-galactose |
|
| Griffonia simplicifolia lectin II (GSL II) | alpha- or beta-linked N-acetylglucosamine residues |
|
| Helix aspersa lectin (HAL) | terminal N-acetyl-α-D-galactosaminyl residues |
|
| Hippeastrum hybrid lectin (HHL) | (a –1,3) and (a–1,6) linked mannose structures |
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| Helix pomatia lectin (HPL) | α-N-acetyl-D-galactosamine |
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| Jacalin (JAC) | galactosyl (b–1,3) N-acetylgalactosamine |
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| Lens culinaris agglutinin (LCA) | Fucα1–6GlcNAc and α-Man,α-Glc,GlcNAc–Asp of the trimannosyl core |
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| Lycopersicon esculentum lectin (LEL) | N-acetylglucosamine oligomers |
|
| Limulus polyphemus lectin (LPL) | N-acetylated D-hexosamines |
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| Lotus tetragonolobus lectin (LTL) | alpha-linked L-fucose |
|
| Maackia amurensis lectin I (MAL I) | Siaα2-3Gal |
|
| Maackia amurensis lectin II (MAL II) | Siaα2-3Gal |
|
| Maclura pomifera lectin (MPL) | Galβ1–3GalNAcα-Ser (T) and GalNAcα–Thr/Ser (Tn) |
|
| Naja mossambica lectin (NML) | like ConA, exopolysaccharide |
|
| Narcissus pseudonarcissus lectin (NPL) | polymannose structures containing (a-1,6) linkages. |
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| Peanut agglutinin (PA) | galactosyl (b-1,3) N-acetylgalactosamine |
|
| Phytolacca americana lectin (PAL) | β-GlcNac |
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| Pseudomonas aeruginosa lectin (PAL) | D-galactose |
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| Phaseolus coccineus lectin (PCL) | sialic acid |
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| Phaseolus vulgaris Erythroagglutinin (PHA-E) | NA2 and bisecting GIcNAc |
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| Phaseolus vulgaris Leucoagglutinin (PHA-L) | Tetraantennary complex oligosaccharides |
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| Pisum sativum agglutinin (PSA) | a-linked mannose-containing oligosaccharides |
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| Psophocarpus tetragonolobus lectin I (PTL I) | alpha linked galactosamine |
|
| Psophocarpus tetragonolobus lectin II (PTL II) | beta anomeric configuration |
|
| Ricinus communis agglutinin I (RCA I) | Lac/LacNAc,Terminal Galβ 1-4 GlcNAcβl |
|
| Ricin B Chain (RIC) | Galactose/N-acetylgalactosamine |
|
| Soybean agglutinin (SBA)L | terminal a- or b-linked N-acetylgalactosamine |
|
| Sophora japonica agglutinin (SJA) | N-acetylgalactosamine and galactose residues |
|
| Sambucus nigra lectin (SNA) | Siaα2–6Gal/GalNAc |
|
| Solanum tuberosum lectin (STL) | oligomers of N-acetylglucosamine |
|
| Ulex europaeus agglutinin (UEA) | a -linked fucose residues |
|
| Viscum album lectin (VAL) | β-D-galactosyl residues |
|
| Vicia villosa lectin (VVL) | alpha- or beta-linked terminal N-acetylgalactosamine |
|
| Wisteria floribunda lectin (WFL) | N-acetylgalactosamine linked alpha or beta to the 3 or 6 position of galactose |
|
| Wheat germ agglutinin (WGA) | (GlcNAc)n,multivalent Sia and GalNAc |
Figure 1Morphological changes after HGF treatment in Huh7 cells (200×).
Figure 2Changes in the mRNA expressions of the EMT-related genes induction by 10 ng/ml HGF (24 h, 48 h, 72 h) analysis by qRT-PCR.
All of the relative expression levels of EMT-related genes normalized to β-actin. *p<0.05.
Figure 3Expression of EMT-associated proteins treated with 10 ng/ml for the indicated time course (0, 24, 48, or 72 h) was determined using a western blot analysis.
Figure 4Matrigel cell invasion and adhesion assay of Huh7 cells treated with 10 ng/ml HGF for 72 h.
A, The results of matrigel invasion assay. B, The count number of cell adhesion assay. All the data results are from three independent experiments.
Figure 5The binding affinity to surface glycan expression of Huh7 cells treated with or without HGF is analyzed by lectin microarray containing 50 kinds of lectins.
A, Lectin microarray system; lectins with different binding specificities (left), bound cells on the lectin microarray were scanned with fluorescence scanner (middle and right). B, Lectins for profiling the reduced cell surface glycan expression in EMT by bar graph based on lectin microarray data. C, Lectin for profiling the raised cell surface glycan expression in EMT by bar graph based on lectin microarray data. Data are the average ± SD of three independent measurements.* represent that p<0.05, ** represent that p<0.01.
Figure 6Lectin blot for biotin labeled lectins PHA-E, SNA, AAL, LCA and PHA-L.
Figure 7Differential glycan profiling on cell surface by fluorescence cell lectin-immunochemistry, the results were consistent with the microarray results (100×).
Figure 8Glycosyltransferases involved in the defined glycan synthetic pathway.
A, the Mgat3, Mgat5 and FuT8 involved N-glycan synthesis pathway. B, β3GalT5 gene participate in the sLea synthetic pathway.
Figure 9Glycosyltransferase gene expression in HGF-induced EMT Cells using a qRT-PCR analysis.
*p<0.05. All the data results are from at least three independent experiments.
The result comparison of lectin microarray and qRT-PCR.
| Lectins | Glycan structure | Glycogenes |
| PHA-E↓ | NA2 and bisecting N-acetylglucosamine oligomer |
|
| PHA-L↑ | β1,6 GlcNAc branching structures |
|
| LCA↑ | core fucose |
|
| AAL↑ | sLea |
|