Literature DB >> 23967067

ABC transporters in Dictyostelium discoideum development.

Edward Roshan Miranda1, Olga Zhuchenko, Marko Toplak, Balaji Santhanam, Blaz Zupan, Adam Kuspa, Gad Shaulsky.   

Abstract

ATP-binding cassette (ABC) transporters can translocate a broad spectrum of molecules across the cell membrane including physiological cargo and toxins. ABC transporters are known for the role they play in resistance towards anticancer agents in chemotherapy of cancer patients. There are 68 ABC transporters annotated in the genome of the social amoeba Dictyostelium discoideum. We have characterized more than half of these ABC transporters through a systematic study of mutations in their genes. We have analyzed morphological and transcriptional phenotypes for these mutants during growth and development and found that most of the mutants exhibited rather subtle phenotypes. A few of the genes may share physiological functions, as reflected in their transcriptional phenotypes. Since most of the abc-transporter mutants showed subtle morphological phenotypes, we utilized these transcriptional phenotypes to identify genes that are important for development by looking for transcripts whose abundance was unperturbed in most of the mutants. We found a set of 668 genes that includes many validated D. discoideum developmental genes. We have also found that abcG6 and abcG18 may have potential roles in intercellular signaling during terminal differentiation of spores and stalks.

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Year:  2013        PMID: 23967067      PMCID: PMC3743828          DOI: 10.1371/journal.pone.0070040

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  47 in total

1.  Functional discovery via a compendium of expression profiles.

Authors:  T R Hughes; M J Marton; A R Jones; C J Roberts; R Stoughton; C D Armour; H A Bennett; E Coffey; H Dai; Y D He; M J Kidd; A M King; M R Meyer; D Slade; P Y Lum; S B Stepaniants; D D Shoemaker; D Gachotte; K Chakraburtty; J Simon; M Bard; S H Friend
Journal:  Cell       Date:  2000-07-07       Impact factor: 41.582

2.  CulB, a putative ubiquitin ligase subunit, regulates prestalk cell differentiation and morphogenesis in Dictyostelium spp.

Authors:  Bin Wang; Adam Kuspa
Journal:  Eukaryot Cell       Date:  2002-02

3.  TagA, a putative serine protease/ABC transporter of Dictyostelium that is required for cell fate determination at the onset of development.

Authors:  J Randall Good; Matthew Cabral; Sujata Sharma; Jun Yang; Nancy Van Driessche; Chad A Shaw; Gad Shaulsky; Adam Kuspa
Journal:  Development       Date:  2003-07       Impact factor: 6.868

4.  Rapid generation of gene disruption constructs by in vitro transposition and identification of a Dictyostelium protein kinase that regulates its rate of growth and development.

Authors:  Tomoaki Abe; Judith Langenick; Jeffrey G Williams
Journal:  Nucleic Acids Res       Date:  2003-09-15       Impact factor: 16.971

5.  The breast cancer resistance protein protects against a major chlorophyll-derived dietary phototoxin and protoporphyria.

Authors:  Johan W Jonker; Marije Buitelaar; Els Wagenaar; Martin A Van Der Valk; George L Scheffer; Rik J Scheper; Torsten Plosch; Folkert Kuipers; Ronald P J Oude Elferink; Hilde Rosing; Jos H Beijnen; Alfred H Schinkel
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-12       Impact factor: 11.205

6.  Evolutionary analyses of ABC transporters of Dictyostelium discoideum.

Authors:  Christophe Anjard; William F Loomis
Journal:  Eukaryot Cell       Date:  2002-08

7.  dictyBase: a new Dictyostelium discoideum genome database.

Authors:  Lisa Kreppel; Petra Fey; Pascale Gaudet; Eric Just; Warren A Kibbe; Rex L Chisholm; Alan R Kimmel
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

8.  Liver and marrow of adult mdr-1a/1b(-/-) mice show normal generation, function, and multi-tissue trafficking of primitive hematopoietic cells.

Authors:  Naoyuki Uchida; Frank Y K Leung; Connie J Eaves
Journal:  Exp Hematol       Date:  2002-08       Impact factor: 3.084

9.  Transcriptional profiling of Dictyostelium with RNA sequencing.

Authors:  Edward Roshan Miranda; Gregor Rot; Marko Toplak; Balaji Santhanam; Tomaz Curk; Gad Shaulsky; Blaz Zupan
Journal:  Methods Mol Biol       Date:  2013

10.  ABC transporters required for endocytosis and endosomal pH regulation in Dictyostelium.

Authors:  D T Brazill; L R Meyer; R D Hatton; D A Brock; R H Gomer
Journal:  J Cell Sci       Date:  2001-11       Impact factor: 5.285

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  12 in total

1.  Altered N-glycosylation modulates TgrB1- and TgrC1-mediated development but not allorecognition in Dictyostelium.

Authors:  Cheng-Lin Frank Li; Gong Chen; Amanda Nicole Webb; Gad Shaulsky
Journal:  J Cell Sci       Date:  2015-09-10       Impact factor: 5.285

Review 2.  Transport in technicolor: mapping ATP-binding cassette transporters in sea urchin embryos.

Authors:  Tufan Gökirmak; Lauren E Shipp; Joseph P Campanale; Sascha C T Nicklisch; Amro Hamdoun
Journal:  Mol Reprod Dev       Date:  2014-08-22       Impact factor: 2.609

3.  The ABC transporter, AbcB3, mediates cAMP export in D. discoideum development.

Authors:  Edward Roshan Miranda; Edward A Nam; Adam Kuspa; Gad Shaulsky
Journal:  Dev Biol       Date:  2014-11-20       Impact factor: 3.582

4.  Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum.

Authors:  Rafael David Rosengarten; Balaji Santhanam; Danny Fuller; Mariko Katoh-Kurasawa; William F Loomis; Blaz Zupan; Gad Shaulsky
Journal:  BMC Genomics       Date:  2015-04-13       Impact factor: 3.969

5.  Gene Prioritization by Compressive Data Fusion and Chaining.

Authors:  Marinka Žitnik; Edward A Nam; Christopher Dinh; Adam Kuspa; Gad Shaulsky; Blaž Zupan
Journal:  PLoS Comput Biol       Date:  2015-10-14       Impact factor: 4.475

6.  The Long Noncoding RNA Transcriptome of Dictyostelium discoideum Development.

Authors:  Rafael D Rosengarten; Balaji Santhanam; Janez Kokosar; Gad Shaulsky
Journal:  G3 (Bethesda)       Date:  2017-02-09       Impact factor: 3.154

7.  ABCG2 confers promotion in gastric cancer through modulating downstream CRKL in vitro combining with biostatistics mining.

Authors:  Junqing Wang; Zhou Yunyun; Lu Wang; Xuehua Chen; Zhenggang Zhu
Journal:  Oncotarget       Date:  2017-01-17

8.  The transcription factor Spores Absent A is a PKA dependent inducer of Dictyostelium sporulation.

Authors:  Yoko Yamada; Andrew Cassidy; Pauline Schaap
Journal:  Sci Rep       Date:  2018-04-27       Impact factor: 4.379

9.  Curcumin affects gene expression and reactive oxygen species via a PKA dependent mechanism in Dictyostelium discoideum.

Authors:  William S Swatson; Mariko Katoh-Kurasawa; Gad Shaulsky; Stephen Alexander
Journal:  PLoS One       Date:  2017-11-14       Impact factor: 3.240

Review 10.  Cytokinins in Dictyostelia - A Unique Model for Studying the Functions of Signaling Agents From Species to Kingdoms.

Authors:  Megan M Aoki; R J Neil Emery; Christophe Anjard; Craig R Brunetti; Robert J Huber
Journal:  Front Cell Dev Biol       Date:  2020-06-19
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