Literature DB >> 23964865

The charge transfer problem in density functional theory calculations of aqueously solvated molecules.

Christine M Isborn1, Brendan D Mar, Basile F E Curchod, Ivano Tavernelli, Todd J Martínez.   

Abstract

Recent advances in algorithms and computational hardware have enabled the calculation of excited states with time-dependent density functional theory (TDDFT) for large systems of O(1000) atoms. Unfortunately, the aqueous charge transfer problem in TDDFT (whereby many spuriously low-lying charge transfer excited states are predicted) seems to become more severe as the system size is increased. In this work, we concentrate on the common case where a chromophore is embedded in aqueous solvent. We examine the role of exchange-correlation functionals, basis set effects, ground state geometries, and the treatment of the external environment in order to assess the root cause of this problem. We conclude that the problem rests largely on water molecules at the boundary of a finite cluster model, i.e., "edge waters." We also demonstrate how the TDDFT problem can be related directly to ground state problems. These findings demand caution in the commonly employed strategy that rests on "snapshot" cutout geometries taken from ground state dynamics with molecular mechanics. We also find that the problem is largely ameliorated when the range-separated hybrid functional LC-ωPBEh is used.

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Year:  2013        PMID: 23964865     DOI: 10.1021/jp4058274

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  Large-scale QM/MM free energy simulations of enzyme catalysis reveal the influence of charge transfer.

Authors:  Heather J Kulik
Journal:  Phys Chem Chem Phys       Date:  2018-08-08       Impact factor: 3.676

2.  Reconciliation of chemical, enzymatic, spectroscopic and computational data to assign the absolute configuration of the DNA base lesion spiroiminodihydantoin.

Authors:  Aaron M Fleming; Anita M Orendt; Yanan He; Judy Zhu; Rina K Dukor; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2013-11-21       Impact factor: 15.419

3.  How Large Should the QM Region Be in QM/MM Calculations? The Case of Catechol O-Methyltransferase.

Authors:  Heather J Kulik; Jianyu Zhang; Judith P Klinman; Todd J Martínez
Journal:  J Phys Chem B       Date:  2016-10-28       Impact factor: 2.991

4.  A new pH sensitive fluorescent and white light emissive material through controlled intermolecular charge transfer.

Authors:  Y I Park; O Postupna; A Zhugayevych; H Shin; Y-S Park; B Kim; H-J Yen; P Cheruku; J S Martinez; J W Park; S Tretiak; H-L Wang
Journal:  Chem Sci       Date:  2014-09-10       Impact factor: 9.825

5.  Halogen Bond of Halonium Ions: Benchmarking DFT Methods for the Description of NMR Chemical Shifts.

Authors:  Daniel Sethio; Gerardo Raggi; Roland Lindh; Máté Erdélyi
Journal:  J Chem Theory Comput       Date:  2020-11-02       Impact factor: 6.006

6.  Near UV-Visible electronic absorption originating from charged amino acids in a monomeric protein.

Authors:  Saumya Prasad; Imon Mandal; Shubham Singh; Ashim Paul; Bhubaneswar Mandal; Ravindra Venkatramani; Rajaram Swaminathan
Journal:  Chem Sci       Date:  2017-05-19       Impact factor: 9.825

7.  A Force Balanced Fragmentation Method for ab Initio Molecular Dynamic Simulation of Protein.

Authors:  Mingyuan Xu; Tong Zhu; John Z H Zhang
Journal:  Front Chem       Date:  2018-05-30       Impact factor: 5.221

8.  Towards large scale hybrid QM/MM dynamics of complex systems with advanced point dipole polarizable embeddings.

Authors:  Daniele Loco; Louis Lagardère; Gérardo A Cisneros; Giovanni Scalmani; Michael Frisch; Filippo Lipparini; Benedetta Mennucci; Jean-Philip Piquemal
Journal:  Chem Sci       Date:  2019-06-11       Impact factor: 9.825

  8 in total

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