Literature DB >> 2395871

Molecular phylogeny of Rodentia, Lagomorpha, Primates, Artiodactyla, and Carnivora and molecular clocks.

W H Li1, M Gouy, P M Sharp, C O'hUigin, Y W Yang.   

Abstract

Phylogenetic analysis of DNA sequences from primates, rodents, lagomorphs, artiodactyls, carnivores, and birds strongly suggests that the order Rodentia is an outgroup to the other four mammalian orders and that Artiodactyla and Carnivora belong to a superordinal clade. Further, there is strong evidence against the Glires concept, which unites Lagomorpha and Rodentia. The radiation among Lagomorpha, Primates, and Artiodactyla--Carnivora is very bush-like, but there is some evidence that Lagomorpha has branched off first. Thus, the branching sequence for these five orders of mammals seems to be Rodentia, Lagomorpha, Primates, Artiodactyla, and Carnivora. The branching date for Rodentia could be as early as 100 million years ago. The rate of nucleotide substitution in the rodent lineage is shown to be at least 1.5 times higher than those in the other four mammalian lineages.

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Year:  1990        PMID: 2395871      PMCID: PMC54605          DOI: 10.1073/pnas.87.17.6703

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Amino acid sequence versus morphological data and the interordinal relationships of mammals.

Authors:  A R Wyss; M J Novacek; M C McKenna
Journal:  Mol Biol Evol       Date:  1987-03       Impact factor: 16.240

2.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

3.  Multiple, distinct forms of bovine and human protein kinase C suggest diversity in cellular signaling pathways.

Authors:  L Coussens; P J Parker; L Rhee; T L Yang-Feng; E Chen; M D Waterfield; U Francke; A Ullrich
Journal:  Science       Date:  1986-08-22       Impact factor: 47.728

4.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

Review 5.  A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes.

Authors:  W H Li; C I Wu; C C Luo
Journal:  Mol Biol Evol       Date:  1985-03       Impact factor: 16.240

6.  An evaluation of the molecular clock hypothesis using mammalian DNA sequences.

Authors:  W H Li; M Tanimura; P M Sharp
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

7.  Rate constancy of globin gene evolution in placental mammals.

Authors:  S Easteal
Journal:  Proc Natl Acad Sci U S A       Date:  1988-10       Impact factor: 11.205

8.  Isolation and characterization of a full-length rabbit apolipoprotein E cDNA.

Authors:  Q L Hao; T T Yamin; T C Pan; S L Chen; B S Chen; P A Kroon; Y S Chao
Journal:  Atherosclerosis       Date:  1987-07       Impact factor: 5.162

9.  Evidence for higher rates of nucleotide substitution in rodents than in man.

Authors:  C I Wu; W H Li
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

10.  Mammalian phylogeny: comparison of morphological and molecular results.

Authors:  J Shoshani
Journal:  Mol Biol Evol       Date:  1986-05       Impact factor: 16.240

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  82 in total

1.  Organization of human and mouse skeletal myosin heavy chain gene clusters is highly conserved.

Authors:  A Weiss; D McDonough; B Wertman; L Acakpo-Satchivi; K Montgomery; R Kucherlapati; L Leinwand; K Krauter
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

2.  Purifying selection and birth-and-death evolution in the ubiquitin gene family.

Authors:  M Nei; I B Rogozin; H Piontkivska
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-26       Impact factor: 11.205

3.  Patterns of interallelic divergence at the rabbit b-locus of the immunoglobulin light chain constant region are in agreement with population genetical evidence for overdominant selection.

Authors:  W van der Loo; B Verdoodt
Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

4.  The functional genomic distribution of protein divergence in two animal phyla: coevolution, genomic conflict, and constraint.

Authors:  Cristian I Castillo-Davis; Fyodor A Kondrashov; Daniel L Hartl; Rob J Kulathinal
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

5.  The molecular clock ticks regularly in muroid rodents and hamsters.

Authors:  C O'hUigin; W H Li
Journal:  J Mol Evol       Date:  1992-11       Impact factor: 2.395

6.  Synonymous nucleotide substitution rates in mammalian genes: implications for the molecular clock and the relationship of mammalian orders.

Authors:  M Bulmer; K H Wolfe; P M Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-15       Impact factor: 11.205

7.  Molecular organization and evolution of the D17Leh80-like loci in the mouse t complex.

Authors:  V A Filippov; E V Fedorova; I B Rogozin; N G Kholodilov; A O Ruvinsky
Journal:  Mamm Genome       Date:  1992       Impact factor: 2.957

8.  The effect of branch lengths on phylogeny: an empirical study using highly conserved orthologs from mammalian genomes.

Authors:  Austin L Hughes; Robert Friedman
Journal:  Mol Phylogenet Evol       Date:  2007-05-18       Impact factor: 4.286

9.  Comparative genomics provides evidence for an ancient genome duplication event in fish.

Authors:  J S Taylor; Y Van de Peer; I Braasch; A Meyer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2001-10-29       Impact factor: 6.237

10.  Tempo and mode of mitochondrial DNA evolution in vertebrates at the amino acid sequence level: rapid evolution in warm-blooded vertebrates.

Authors:  J Adachi; Y Cao; M Hasegawa
Journal:  J Mol Evol       Date:  1993-03       Impact factor: 2.395

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