Literature DB >> 23958448

Active DNA demethylation in post-mitotic neurons: a reason for optimism.

David P Gavin1, Kayla A Chase2, Rajiv P Sharma3.   

Abstract

Over the last several years proteins involved in base excision repair (BER) have been implicated in active DNA demethylation. We review the literature supporting BER as a means of active DNA demethylation, and explain how the various components function and cooperate to remove the potentially most enduring means of epigenetic gene regulation. Recent evidence indicates that the same pathways implicated during periods of widespread DNA demethylation, such as the erasure of methyl marks in the paternal pronucleus soon after fertilization, are operational in post-mitotic neurons. Neuronal functional identities, defined here as the result of a combination of neuronal subtype, location, and synaptic connections are largely maintained through DNA methylation. Chronic mental illnesses, such as schizophrenia, may be the result of both altered neurotransmitter levels and neurons that have assumed dysfunctional neuronal identities. A limitation of most current psychopharmacological agents is their focus on the former, while not addressing the more profound latter pathophysiological process. Previously, it was believed that active DNA demethylation in post-mitotic neurons was rare if not impossible. If this were the case, then reversing the factors that maintain neuronal identity, would be highly unlikely. The emergence of an active DNA demethylation pathway in the brain is a reason for great optimism in psychiatry as it provides a means by which previously pathological neurons may be reprogrammed to serve a more favorable role. Agents targeting epigenetic processes have shown much promise in this regard, and may lead to substantial gains over traditional pharmacological approaches. Published by Elsevier Ltd.

Entities:  

Keywords:  5-Hydroxymethylcytosine; 5-Methylcytosine; 5-carboxylcytosine; 5-formylcytosine; 5-hydroxymethylcytosine; 5-hydroxymethyluracil; 5-methylcytosine; 5CaC; 5FC; 5HMC; 5HMU; 5MC; AICDA; APE1; APOBEC; BDNF; BER; COMT; CpG; CpG methylation; DNA methyltransferase; DNMT; ECS; FGF; G; GADD45; H3K27; H3K9me2; HDAC; KCl; LSD1; MBD; MeCP2; N-methyl d-aspartate receptor subtype 2B; N-methyl-d-aspartic acid; NER; NMDA; NR2B; PARP1; PFC; PGC; PP1; SMUG1; T; TDG; TET; X-ray repair cross-complementing protein-1; XRCC1; activation-induced cytidine deaminase; apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like; apurinic/apyrimidinic (AP) endonuclease; base excision repair; brain-derived neurotrophic factor; catechol-O-methyltransferase; cytosine–phosphate–guanine; dimethylated lysine 9 of histone 3; electroconvulsive seizure; fibroblast growth factor; growth arrest and DNA damage; guanine; histone deacetylase; lysine 27 of histone 3; lysine-specific demethylase-1; methyl CpG binding protein 2; methyl-CpG binding domain; nucleotide excision repair; poly ADP ribose polymerase-1; potassium chloride; prefrontal cortex; primordial germ cells; protein phosphatase 1; single-strand selective monofunctional uracil-DNA glycosylase 1; ten-eleven translocation; thymidine; thymine-DNA glycosylase

Mesh:

Substances:

Year:  2013        PMID: 23958448      PMCID: PMC3864977          DOI: 10.1016/j.neuropharm.2013.07.036

Source DB:  PubMed          Journal:  Neuropharmacology        ISSN: 0028-3908            Impact factor:   5.250


  180 in total

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Journal:  FEBS Lett       Date:  2001-06-22       Impact factor: 4.124

2.  Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability.

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Journal:  Nature       Date:  2011-01-30       Impact factor: 49.962

3.  Induction and superinduction of growth arrest and DNA damage gene 45 (GADD45) alpha and beta messenger RNAs by histone deacetylase inhibitors trichostatin A (TSA) and butyrate in SW620 human colon carcinoma cells.

Authors:  Zunxuan Chen; Steven Clark; Marian Birkeland; Chiu Mei Sung; Amparo Lago; Ronggang Liu; Robert Kirkpatrick; Kyung Johanson; James D Winkler; Erding Hu
Journal:  Cancer Lett       Date:  2002-12-15       Impact factor: 8.679

4.  Rapid turnover of DNA methylation in human cells.

Authors:  Yoshiaki Yamagata; Pàl Szabó; David Szüts; Caroline Bacquet; Tamàs Arànyi; Andras Páldi
Journal:  Epigenetics       Date:  2012-02       Impact factor: 4.528

5.  A mammalian protein with specific demethylase activity for mCpG DNA.

Authors:  S K Bhattacharya; S Ramchandani; N Cervoni; M Szyf
Journal:  Nature       Date:  1999-02-18       Impact factor: 49.962

6.  Effects of histone deacetylase inhibitor Trichostatin A on epigenetic changes and transcriptional activation of Bdnf promoter 1 by rat hippocampal neurons.

Authors:  Feng Tian; Ann M Marini; Robert H Lipsky
Journal:  Ann N Y Acad Sci       Date:  2010-06       Impact factor: 5.691

7.  Early-stage epigenetic modification during somatic cell reprogramming by Parp1 and Tet2.

Authors:  Claudia A Doege; Keiichi Inoue; Toru Yamashita; David B Rhee; Skylar Travis; Ryousuke Fujita; Paolo Guarnieri; Govind Bhagat; William B Vanti; Alan Shih; Ross L Levine; Sara Nik; Emily I Chen; Asa Abeliovich
Journal:  Nature       Date:  2012-08-30       Impact factor: 49.962

8.  Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming.

Authors:  Hugh D Morgan; Wendy Dean; Heather A Coker; Wolf Reik; Svend K Petersen-Mahrt
Journal:  J Biol Chem       Date:  2004-09-24       Impact factor: 5.157

9.  CREB has a context-dependent role in activity-regulated transcription and maintains neuronal cholesterol homeostasis.

Authors:  Thomas Lemberger; Jan Rodriguez Parkitna; Minqiang Chai; Günther Schütz; David Engblom
Journal:  FASEB J       Date:  2008-04-18       Impact factor: 5.191

Review 10.  The AID/APOBEC family of nucleic acid mutators.

Authors:  Silvestro G Conticello
Journal:  Genome Biol       Date:  2008-06-17       Impact factor: 13.583

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  31 in total

1.  Altered amygdala DNA methylation mechanisms after adolescent alcohol exposure contribute to adult anxiety and alcohol drinking.

Authors:  Amul J Sakharkar; Evan J Kyzar; David P Gavin; Huaibo Zhang; Ying Chen; Harish R Krishnan; Dennis R Grayson; Subhash C Pandey
Journal:  Neuropharmacology       Date:  2019-06-20       Impact factor: 5.250

2.  Dexamethasone Treatment Leads to Enhanced Fear Extinction and Dynamic Fkbp5 Regulation in Amygdala.

Authors:  Takehito Sawamura; Torsten Klengel; Antonio Armario; Tanja Jovanovic; Seth D Norrholm; Kerry J Ressler; Raül Andero
Journal:  Neuropsychopharmacology       Date:  2015-07-15       Impact factor: 7.853

Review 3.  Amyotrophic lateral sclerosis: mechanisms and therapeutics in the epigenomic era.

Authors:  Ximena Paez-Colasante; Claudia Figueroa-Romero; Stacey A Sakowski; Stephen A Goutman; Eva L Feldman
Journal:  Nat Rev Neurol       Date:  2015-04-21       Impact factor: 42.937

4.  Ethanol-induced changes in poly (ADP ribose) polymerase and neuronal developmental gene expression.

Authors:  David P Gavin; Handojo Kusumo; Rajiv P Sharma; Marina Guizzetti
Journal:  Neuropharmacology       Date:  2016-08-04       Impact factor: 5.250

5.  A unique gene expression signature associated with serotonin 2C receptor RNA editing in the prefrontal cortex and altered in suicide.

Authors:  Antonio Fabio Di Narzo; Alexey Kozlenkov; Panos Roussos; Ke Hao; Yasmin Hurd; David A Lewis; Etienne Sibille; Larry J Siever; Eugene Koonin; Stella Dracheva
Journal:  Hum Mol Genet       Date:  2014-04-29       Impact factor: 6.150

Review 6.  The dynamic epigenome and its implications for behavioral interventions: a role for epigenetics to inform disorder prevention and health promotion.

Authors:  Moshe Szyf; Yi-Yang Tang; Karl G Hill; Rashelle Musci
Journal:  Transl Behav Med       Date:  2016-03       Impact factor: 3.046

7.  Alterations of the lung methylome in allergic airway hyper-responsiveness.

Authors:  Robert Ys Cheng; Yan Shang; Nathachit Limjunyawong; Tyna Dao; Sandhya Das; Richard Rabold; James Sk Sham; Wayne Mitzner; Wan-Yee Tang
Journal:  Environ Mol Mutagen       Date:  2014-01-21       Impact factor: 3.216

Review 8.  Molecular mechanisms of synaptic remodeling in alcoholism.

Authors:  Evan J Kyzar; Subhash C Pandey
Journal:  Neurosci Lett       Date:  2015-01-23       Impact factor: 3.046

9.  Adolescent binge-pattern alcohol exposure alters genome-wide DNA methylation patterns in the hypothalamus of alcohol-naïve male offspring.

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Journal:  Alcohol       Date:  2016-10-24       Impact factor: 2.405

Review 10.  The epigenetic landscape of alcoholism.

Authors:  Harish R Krishnan; Amul J Sakharkar; Tara L Teppen; Tiffani D M Berkel; Subhash C Pandey
Journal:  Int Rev Neurobiol       Date:  2014       Impact factor: 3.230

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