Literature DB >> 23953105

A cluster to remember.

Gerd A Blobel1, Ross C Hardison.   

Abstract

Based on a massive transcription factor location analysis within a single cell type, in this issue Yan et al. find that the great majority of occupancies occur within dense clusters of up to 100 factors that almost invariably contain cohesins. Retention of cohesins at cluster sites during mitosis raises the possibility that they contribute to transcriptional memory during the cell cycle.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23953105      PMCID: PMC3878159          DOI: 10.1016/j.cell.2013.07.041

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  9 in total

1.  Tissue-specific mitotic bookmarking by hematopoietic transcription factor GATA1.

Authors:  Stephan Kadauke; Maheshi I Udugama; Jan M Pawlicki; Jordan C Achtman; Deepti P Jain; Yong Cheng; Ross C Hardison; Gerd A Blobel
Journal:  Cell       Date:  2012-08-17       Impact factor: 41.582

2.  Architecture of the human regulatory network derived from ENCODE data.

Authors:  Mark B Gerstein; Anshul Kundaje; Manoj Hariharan; Stephen G Landt; Koon-Kiu Yan; Chao Cheng; Xinmeng Jasmine Mu; Ekta Khurana; Joel Rozowsky; Roger Alexander; Renqiang Min; Pedro Alves; Alexej Abyzov; Nick Addleman; Nitin Bhardwaj; Alan P Boyle; Philip Cayting; Alexandra Charos; David Z Chen; Yong Cheng; Declan Clarke; Catharine Eastman; Ghia Euskirchen; Seth Frietze; Yao Fu; Jason Gertz; Fabian Grubert; Arif Harmanci; Preti Jain; Maya Kasowski; Phil Lacroute; Jing Jane Leng; Jin Lian; Hannah Monahan; Henriette O'Geen; Zhengqing Ouyang; E Christopher Partridge; Dorrelyn Patacsil; Florencia Pauli; Debasish Raha; Lucia Ramirez; Timothy E Reddy; Brian Reed; Minyi Shi; Teri Slifer; Jing Wang; Linfeng Wu; Xinqiong Yang; Kevin Y Yip; Gili Zilberman-Schapira; Serafim Batzoglou; Arend Sidow; Peggy J Farnham; Richard M Myers; Sherman M Weissman; Michael Snyder
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

3.  Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors.

Authors:  Kevin Y Yip; Chao Cheng; Nitin Bhardwaj; James B Brown; Jing Leng; Anshul Kundaje; Joel Rozowsky; Ewan Birney; Peter Bickel; Michael Snyder; Mark Gerstein
Journal:  Genome Biol       Date:  2012-09-26       Impact factor: 13.583

4.  Mitotic bookmarking by transcription factors.

Authors:  Stephan Kadauke; Gerd A Blobel
Journal:  Epigenetics Chromatin       Date:  2013-04-02       Impact factor: 4.954

5.  Mediator and cohesin connect gene expression and chromatin architecture.

Authors:  Michael H Kagey; Jamie J Newman; Steve Bilodeau; Ye Zhan; David A Orlando; Nynke L van Berkum; Christopher C Ebmeier; Jesse Goossens; Peter B Rahl; Stuart S Levine; Dylan J Taatjes; Job Dekker; Richard A Young
Journal:  Nature       Date:  2010-08-18       Impact factor: 49.962

6.  Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions.

Authors:  Stewart MacArthur; Xiao-Yong Li; Jingyi Li; James B Brown; Hou Cheng Chu; Lucy Zeng; Brandi P Grondona; Aaron Hechmer; Lisa Simirenko; Soile V E Keränen; David W Knowles; Mark Stapleton; Peter Bickel; Mark D Biggin; Michael B Eisen
Journal:  Genome Biol       Date:  2009-07-23       Impact factor: 13.583

7.  Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus.

Authors:  Suzana Hadjur; Luke M Williams; Natalie K Ryan; Bradley S Cobb; Tom Sexton; Peter Fraser; Amanda G Fisher; Matthias Merkenschlager
Journal:  Nature       Date:  2009-05-20       Impact factor: 49.962

Review 8.  Cohesin at active genes: a unifying theme for cohesin and gene expression from model organisms to humans.

Authors:  Dale Dorsett; Matthias Merkenschlager
Journal:  Curr Opin Cell Biol       Date:  2013-03-01       Impact factor: 8.382

9.  Genome-wide control of RNA polymerase II activity by cohesin.

Authors:  Cheri A Schaaf; Hojoong Kwak; Amanda Koenig; Ziva Misulovin; David W Gohara; Audrey Watson; Yanjiao Zhou; John T Lis; Dale Dorsett
Journal:  PLoS Genet       Date:  2013-03-21       Impact factor: 5.917

  9 in total

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