Literature DB >> 23950877

Categorizing ideas about trees: a tree of trees.

Marie Fisler1, Guillaume Lecointre.   

Abstract

The aim of this study is to explore whether matrices and MP trees used to produce systematic categories of organisms could be useful to produce categories of ideas in history of science. We study the history of the use of trees in systematics to represent the diversity of life from 1766 to 1991. We apply to those ideas a method inspired from coding homologous parts of organisms. We discretize conceptual parts of ideas, writings and drawings about trees contained in 41 main writings; we detect shared parts among authors and code them into a 91-characters matrix and use a tree representation to show who shares what with whom. In other words, we propose a hierarchical representation of the shared ideas about trees among authors: this produces a "tree of trees." Then, we categorize schools of tree-representations. Classical schools like "cladists" and "pheneticists" are recovered but others are not: "gradists" are separated into two blocks, one of them being called here "grade theoreticians." We propose new interesting categories like the "buffonian school," the "metaphoricians," and those using "strictly genealogical classifications." We consider that networks are not useful to represent shared ideas at the present step of the study. A cladogram is made for showing who is sharing what with whom, but also heterobathmy and homoplasy of characters. The present cladogram is not modelling processes of transmission of ideas about trees, and here it is mostly used to test for proximity of ideas of the same age and for categorization.

Entities:  

Mesh:

Year:  2013        PMID: 23950877      PMCID: PMC3737276          DOI: 10.1371/journal.pone.0068814

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  9 in total

1.  Early steps of metabolism evolution inferred by cladistic analysis of amino acid catabolic pathways.

Authors:  Chomin Cunchillos; Guillaume Lecointre
Journal:  C R Biol       Date:  2002-02       Impact factor: 1.583

2.  The roots of phylogeny: how did Haeckel build his trees?

Authors:  Benoît Dayrat
Journal:  Syst Biol       Date:  2003-08       Impact factor: 15.683

3.  Application of phylogenetic networks in evolutionary studies.

Authors:  Daniel H Huson; David Bryant
Journal:  Mol Biol Evol       Date:  2005-10-12       Impact factor: 16.240

4.  A phylogenetic approach to cultural evolution.

Authors:  Ruth Mace; Clare J Holden
Journal:  Trends Ecol Evol       Date:  2004-12-24       Impact factor: 17.712

5.  Ordering events of biochemical evolution.

Authors:  C Cunchillos; G Lecointre
Journal:  Biochimie       Date:  2007-01-04       Impact factor: 4.079

6.  Trees of trees: an approach to comparing multiple alternative phylogenies.

Authors:  Tom M W Nye
Journal:  Syst Biol       Date:  2008-10       Impact factor: 15.683

Review 7.  Trees and networks before and after Darwin.

Authors:  Mark A Ragan
Journal:  Biol Direct       Date:  2009-11-16       Impact factor: 4.540

8.  Integrating the universal metabolism into a phylogenetic analysis.

Authors:  Chomin Cunchillos; Guillaume Lecointre
Journal:  Mol Biol Evol       Date:  2004-09-08       Impact factor: 16.240

9.  Evolution of amino acid metabolism inferred through cladistic analysis.

Authors:  Chomin Cunchillos; Guillaume Lecointre
Journal:  J Biol Chem       Date:  2003-08-29       Impact factor: 5.157

  9 in total
  2 in total

1.  The treeness of the tree of historical trees of life.

Authors:  Marie Fisler; Cédric Crémière; Pierre Darlu; Guillaume Lecointre
Journal:  PLoS One       Date:  2020-01-15       Impact factor: 3.240

2.  The Evolution of Musical Diversity: The Key Role of Vertical Transmission.

Authors:  Sylvie Le Bomin; Guillaume Lecointre; Evelyne Heyer
Journal:  PLoS One       Date:  2016-03-30       Impact factor: 3.240

  2 in total

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