Literature DB >> 23948725

Non-coding RNAs in the development and pathogenesis of eukaryotic microbes.

Nadia Chacko1, Xiaorong Lin.   

Abstract

RNA has long been regarded as the important intermediary in the central dogma of gene expression. Recently, the importance of RNAs in the regulation of gene expression became evident with the identification and characterization of non-protein coding transcripts named non-coding RNAs (ncRNAs). The ncRNAs, small and long, are ubiquitously present in all three domains of life and are being recognized for their important roles in genome defense and development. Some of the ncRNAs have been associated with diseases, and therefore, they offer diagnostic and therapeutic potential. In this mini-review, we have highlighted some recent research on the ncRNAs identified in eukaryotic microbes, with special emphasis on fungi that are pathogenic to humans or plants when possible. It is our contention that further elucidation and understanding of ncRNAs will advance our understanding of the development and pathogenesis of eukaryotic microbes and offer alternatives in the diagnosis and treatment of the diseases caused by these pathogens.

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Year:  2013        PMID: 23948725      PMCID: PMC3791853          DOI: 10.1007/s00253-013-5160-y

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  68 in total

1.  S. pombe mei2+ encodes an RNA-binding protein essential for premeiotic DNA synthesis and meiosis I, which cooperates with a novel RNA species meiRNA.

Authors:  Y Watanabe; M Yamamoto
Journal:  Cell       Date:  1994-08-12       Impact factor: 41.582

2.  Stalled spliceosomes are a signal for RNAi-mediated genome defense.

Authors:  Phillip A Dumesic; Prashanthi Natarajan; Changbin Chen; Ines A Drinnenberg; Benjamin J Schiller; James Thompson; James J Moresco; John R Yates; David P Bartel; Hiten D Madhani
Journal:  Cell       Date:  2013-02-14       Impact factor: 41.582

3.  Pathogenicity determinants in smut fungi revealed by genome comparison.

Authors:  Jan Schirawski; Gertrud Mannhaupt; Karin Münch; Thomas Brefort; Kerstin Schipper; Gunther Doehlemann; Maurizio Di Stasio; Nicole Rössel; Artemio Mendoza-Mendoza; Doris Pester; Olaf Müller; Britta Winterberg; Elmar Meyer; Hassan Ghareeb; Theresa Wollenberg; Martin Münsterkötter; Philip Wong; Mathias Walter; Eva Stukenbrock; Ulrich Güldener; Regine Kahmann
Journal:  Science       Date:  2010-12-10       Impact factor: 47.728

4.  Characterizing the role of RNA silencing components in Cryptococcus neoformans.

Authors:  Guilhem Janbon; Shinae Maeng; Dong-Hoon Yang; Young-Joon Ko; Kwang-Woo Jung; Frédérique Moyrand; Anna Floyd; Joseph Heitman; Yong-Sun Bahn
Journal:  Fungal Genet Biol       Date:  2010-11-09       Impact factor: 3.495

5.  A role for noncoding transcription in activation of the yeast PHO5 gene.

Authors:  Jay P Uhler; Christina Hertel; Jesper Q Svejstrup
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

6.  qiRNA is a new type of small interfering RNA induced by DNA damage.

Authors:  Heng-Chi Lee; Shwu-Shin Chang; Swati Choudhary; Antti P Aalto; Mekhala Maiti; Dennis H Bamford; Yi Liu
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

7.  Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi.

Authors:  Thomas A Volpe; Catherine Kidner; Ira M Hall; Grace Teng; Shiv I S Grewal; Robert A Martienssen
Journal:  Science       Date:  2002-08-22       Impact factor: 47.728

8.  The fission yeast meiotic regulator Mei2p forms a dot structure in the horse-tail nucleus in association with the sme2 locus on chromosome II.

Authors:  Tadayuki Shimada; Akira Yamashita; Masayuki Yamamoto
Journal:  Mol Biol Cell       Date:  2003-03-07       Impact factor: 4.138

Review 9.  Small silencing RNAs: an expanding universe.

Authors:  Megha Ghildiyal; Phillip D Zamore
Journal:  Nat Rev Genet       Date:  2009-02       Impact factor: 53.242

10.  Deciphering squamous cell carcinoma using multidimensional genomic approaches.

Authors:  Ewan A Gibb; Katey S S Enfield; Ivy F L Tsui; Raj Chari; Stephen Lam; Carlos E Alvarez; Wan L Lam
Journal:  J Skin Cancer       Date:  2010-12-27
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  8 in total

Review 1.  Host-Pathogen interactions modulated by small RNAs.

Authors:  Waqar Islam; Saif Ul Islam; Muhammad Qasim; Liande Wang
Journal:  RNA Biol       Date:  2017-04-21       Impact factor: 4.652

Review 2.  Small RNAs--the secret agents in the plant-pathogen interactions.

Authors:  Arne Weiberg; Hailing Jin
Journal:  Curr Opin Plant Biol       Date:  2015-06-26       Impact factor: 7.834

3.  Transcriptome analysis of smut fungi reveals widespread intergenic transcription and conserved antisense transcript expression.

Authors:  Michael E Donaldson; Lauren A Ostrowski; Kristi M Goulet; Barry J Saville
Journal:  BMC Genomics       Date:  2017-05-02       Impact factor: 3.969

4.  Chromosome-Level Comprehensive Genome of Mangrove Sediment-Derived Fungus Penicillium variabile HXQ-H-1.

Authors:  Ling Peng; Liangwei Li; Xiaochuan Liu; Jianwei Chen; Chengcheng Shi; Wenjie Guo; Qiwu Xu; Guangyi Fan; Xin Liu; Dehai Li
Journal:  J Fungi (Basel)       Date:  2019-12-23

5.  Long Non-Coding RNAs in Cryptococcus neoformans: Insights Into Fungal Pathogenesis.

Authors:  Murat C Kalem; John C Panepinto
Journal:  Front Cell Infect Microbiol       Date:  2022-03-17       Impact factor: 5.293

6.  RNA sequencing reveals dynamic expression of spleen lncRNAs and mRNAs in Beagle dogs infected by Toxocara canis.

Authors:  Yue Xu; Wen-Bin Zheng; Hao-Yu Li; Lang Cai; Yang Zou; Shi-Chen Xie; Xing-Quan Zhu; Hany M Elsheikha
Journal:  Parasit Vectors       Date:  2022-08-04       Impact factor: 4.047

7.  Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.

Authors:  Guilhem Janbon; Kate L Ormerod; Damien Paulet; Edmond J Byrnes; Vikas Yadav; Gautam Chatterjee; Nandita Mullapudi; Chung-Chau Hon; R Blake Billmyre; François Brunel; Yong-Sun Bahn; Weidong Chen; Yuan Chen; Eve W L Chow; Jean-Yves Coppée; Anna Floyd-Averette; Claude Gaillardin; Kimberly J Gerik; Jonathan Goldberg; Sara Gonzalez-Hilarion; Sharvari Gujja; Joyce L Hamlin; Yen-Ping Hsueh; Giuseppe Ianiri; Steven Jones; Chinnappa D Kodira; Lukasz Kozubowski; Woei Lam; Marco Marra; Larry D Mesner; Piotr A Mieczkowski; Frédérique Moyrand; Kirsten Nielsen; Caroline Proux; Tristan Rossignol; Jacqueline E Schein; Sheng Sun; Carolin Wollschlaeger; Ian A Wood; Qiandong Zeng; Cécile Neuvéglise; Carol S Newlon; John R Perfect; Jennifer K Lodge; Alexander Idnurm; Jason E Stajich; James W Kronstad; Kaustuv Sanyal; Joseph Heitman; James A Fraser; Christina A Cuomo; Fred S Dietrich
Journal:  PLoS Genet       Date:  2014-04-17       Impact factor: 5.917

8.  The lncRNA RZE1 Controls Cryptococcal Morphological Transition.

Authors:  Nadia Chacko; Youbao Zhao; Ence Yang; Linqi Wang; James J Cai; Xiaorong Lin
Journal:  PLoS Genet       Date:  2015-11-20       Impact factor: 5.917

  8 in total

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