Literature DB >> 23945614

Different thermodynamic signatures for DNA minor groove binding with changes in salt concentration and temperature.

Shuo Wang1, Arvind Kumar, Karl Aston, Binh Nguyen, James K Bashkin, David W Boykin, W David Wilson.   

Abstract

The effects of salt concentration and temperature on the thermodynamics of DNA minor groove binding have quite different signatures: binding enthalpy is salt concentration independent but temperature dependent. Conversely, binding free energy is salt dependent but essentially temperature independent through enthalpy-entropy compensation.

Entities:  

Mesh：

Substances：

Year:  2013        PMID： 23945614      PMCID： PMC3791883          DOI： 10.1039/c3cc44569k

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  24 in total

1.  DNA binding and bending by HMG boxes: energetic determinants of specificity.

Authors:  Anatoly I Dragan; Christopher M Read; Elena N Makeyeva; Ekaterina I Milgotina; Mair E A Churchill; Colyn Crane-Robinson; Peter L Privalov
Journal:  J Mol Biol       Date:  2004-10-15       Impact factor: 5.469

2.  Electrostatic contributions to heat capacity changes of DNA-ligand binding.

Authors:  K Gallagher; K Sharp
Journal:  Biophys J       Date:  1998-08       Impact factor: 4.033

Review 3.  Dissecting the free energy of drug binding to DNA.

Authors:  J B Chaires
Journal:  Anticancer Drug Des       Date:  1996-12

4.  Nonspecific interaction of lac repressor with DNA: an association reaction driven by counterion release.

Authors:  P L deHaseth; T M Lohman; M T Record
Journal:  Biochemistry       Date:  1977-11-01       Impact factor: 3.162

5.  DNA bending at adenine . thymine tracts.

Authors:  H S Koo; H M Wu; D M Crothers
Journal:  Nature       Date:  1986 Apr 10-16       Impact factor: 49.962

6.  Salt-dependent conformational transitions in the self-complementary deoxydodecanucleotide d(CGCAATTCGCG): evidence for hairpin formation.

Authors:  L A Marky; K S Blumenfeld; S Kozlowski; K J Breslauer
Journal:  Biopolymers       Date:  1983-04       Impact factor: 2.505

7.  Mechanism of intercalation: ion effects on the equilibrium and kinetic constants for the interaction of propidium and ethidium with DNA.

Authors:  W D Wilson; C R Krishnamoorthy; Y H Wang; J C Smith
Journal:  Biopolymers       Date:  1985-10       Impact factor: 2.505

8.  Structure of a B-DNA dodecamer. III. Geometry of hydration.

Authors:  H R Drew; R E Dickerson
Journal:  J Mol Biol       Date:  1981-09-25       Impact factor: 5.469

9.  Analysis of ion concentration effects of the kinetics of protein-nucleic acid interactions. Application to lac repressor-operator interactions.

Authors:  T M Lohman; P L DeHaseth; M T Record
Journal:  Biophys Chem       Date:  1978-09       Impact factor: 2.352

10.  The molecular origin of DNA-drug specificity in netropsin and distamycin.

Authors:  M L Kopka; C Yoon; D Goodsell; P Pjura; R E Dickerson
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205
View more
  12 in total

1.  Modulation of DNA-polyamide interaction by β-alanine substitutions: a study of positional effects on binding affinity, kinetics and thermodynamics.

Authors:  Shuo Wang; Karl Aston; Kevin J Koeller; G Davis Harris; Nigam P Rath; James K Bashkin; W David Wilson
Journal:  Org Biomol Chem       Date:  2014-10-14       Impact factor: 3.876

2.  Role of Salt Valency in the Switch of H-NS Proteins between DNA-Bridging and DNA-Stiffening Modes.

Authors:  Marc Joyeux
Journal:  Biophys J       Date:  2018-03-23       Impact factor: 4.033

3.  Investigation of the electrostatic and hydration properties of DNA minor groove-binding by a heterocyclic diamidine by osmotic pressure.

Authors:  Noa Erlitzki; Kenneth Huang; Suela Xhani; Abdelbasset A Farahat; Arvind Kumar; David W Boykin; Gregory M K Poon
Journal:  Biophys Chem       Date:  2017-03-20       Impact factor: 2.352

4.  A fluorescent reporter on electrostatic DNA-ligand interactions.

Authors:  Chandrashekhar U Murade; George T Shubeita
Journal:  Biomed Opt Express       Date:  2021-12-07       Impact factor: 3.732

5.  Dissecting Dynamic and Hydration Contributions to Sequence-Dependent DNA Minor Groove Recognition.

Authors:  Van L T Ha; Noa Erlitzki; Abdelbasset A Farahat; Arvind Kumar; David W Boykin; Gregory M K Poon
Journal:  Biophys J       Date:  2020-08-20       Impact factor: 4.033

6.  DNA Binding Polyamides and the Importance of DNA Recognition in their use as Gene-Specific and Antiviral Agents.

Authors:  Kevin J Koeller; G Davis Harris; Karl Aston; Gaofei He; Carlos H Castaneda; Melissa A Thornton; Terri G Edwards; Shuo Wang; Rupesh Nanjunda; W David Wilson; Chris Fisher; James K Bashkin
Journal:  Med Chem (Los Angeles)       Date:  2014-02-20

7.  Impact of Self-Association on the Architectural Properties of Bacterial Nucleoid Proteins.

Authors:  Marc Joyeux
Journal:  Biophys J       Date:  2020-12-17       Impact factor: 4.033

8.  Determination of Ion Atmosphere Effects on the Nucleic Acid Electrostatic Potential and Ligand Association Using AH+·C Wobble Formation in Double-Stranded DNA.

Authors:  Benjamin E Allred; Magdalena Gebala; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2017-05-26       Impact factor: 15.419

9.  The unusual monomer recognition of guanine-containing mixed sequence DNA by a dithiophene heterocyclic diamidine.

Authors:  Manoj Munde; Arvind Kumar; Paul Peixoto; Sabine Depauw; Mohamed A Ismail; Abdelbasset A Farahat; Ananya Paul; Martial V Say; Marie-Hélène David-Cordonnier; David W Boykin; W David Wilson
Journal:  Biochemistry       Date:  2014-02-13       Impact factor: 3.162

10.  Understanding mixed sequence DNA recognition by novel designed compounds: the kinetic and thermodynamic behavior of azabenzimidazole diamidines.

Authors:  Ananya Paul; Yun Chai; David W Boykin; W David Wilson
Journal:  Biochemistry       Date:  2014-12-24       Impact factor: 3.162
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.