Literature DB >> 23940263

The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment.

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Abstract

Insects and their arthropod relatives including mites, spiders, and crustaceans play major roles in the world's terrestrial, aquatic, and marine ecosystems. Arthropods compete with humans for food and transmit devastating diseases. They also comprise the most diverse and successful branch of metazoan evolution, with millions of extant species. Here, we describe an international effort to guide arthropod genomic efforts, from species prioritization to methodology and informatics. The 5000 arthropod genomes initiative (i5K) community met formally in 2012 to discuss a roadmap for sequencing and analyzing 5000 high-priority arthropods and is continuing this effort via pilot projects, the development of standard operating procedures, and training of students and career scientists. With university, governmental, and industry support, the i5K Consortium aspires to deliver sequences and analytical tools for each of the arthropod branches and each of the species having beneficial and negative effects on humankind.

Entities:  

Keywords:  agriculture; comparative genomics; disease vector; genome sequencing; insect evolution

Mesh:

Year:  2013        PMID: 23940263      PMCID: PMC4046820          DOI: 10.1093/jhered/est050

Source DB:  PubMed          Journal:  J Hered        ISSN: 0022-1503            Impact factor:   2.645


  3 in total

1.  Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species.

Authors: 
Journal:  J Hered       Date:  2009-11-05       Impact factor: 2.645

2.  The genome of Tetranychus urticae reveals herbivorous pest adaptations.

Authors:  Miodrag Grbić; Thomas Van Leeuwen; Richard M Clark; Stephane Rombauts; Pierre Rouzé; Vojislava Grbić; Edward J Osborne; Wannes Dermauw; Phuong Cao Thi Ngoc; Félix Ortego; Pedro Hernández-Crespo; Isabel Diaz; Manuel Martinez; Maria Navajas; Élio Sucena; Sara Magalhães; Lisa Nagy; Ryan M Pace; Sergej Djuranović; Guy Smagghe; Masatoshi Iga; Olivier Christiaens; Jan A Veenstra; John Ewer; Rodrigo Mancilla Villalobos; Jeffrey L Hutter; Stephen D Hudson; Marisela Velez; Soojin V Yi; Jia Zeng; Andre Pires-daSilva; Fernando Roch; Marc Cazaux; Marie Navarro; Vladimir Zhurov; Gustavo Acevedo; Anica Bjelica; Jeffrey A Fawcett; Eric Bonnet; Cindy Martens; Guy Baele; Lothar Wissler; Aminael Sanchez-Rodriguez; Luc Tirry; Catherine Blais; Kristof Demeestere; Stefan R Henz; T Ryan Gregory; Johannes Mathieu; Lou Verdon; Laurent Farinelli; Jeremy Schmutz; Erika Lindquist; René Feyereisen; Yves Van de Peer
Journal:  Nature       Date:  2011-11-23       Impact factor: 49.962

3.  The genome sequence of Drosophila melanogaster.

Authors:  M D Adams; S E Celniker; R A Holt; C A Evans; J D Gocayne; P G Amanatides; S E Scherer; P W Li; R A Hoskins; R F Galle; R A George; S E Lewis; S Richards; M Ashburner; S N Henderson; G G Sutton; J R Wortman; M D Yandell; Q Zhang; L X Chen; R C Brandon; Y H Rogers; R G Blazej; M Champe; B D Pfeiffer; K H Wan; C Doyle; E G Baxter; G Helt; C R Nelson; G L Gabor; J F Abril; A Agbayani; H J An; C Andrews-Pfannkoch; D Baldwin; R M Ballew; A Basu; J Baxendale; L Bayraktaroglu; E M Beasley; K Y Beeson; P V Benos; B P Berman; D Bhandari; S Bolshakov; D Borkova; M R Botchan; J Bouck; P Brokstein; P Brottier; K C Burtis; D A Busam; H Butler; E Cadieu; A Center; I Chandra; J M Cherry; S Cawley; C Dahlke; L B Davenport; P Davies; B de Pablos; A Delcher; Z Deng; A D Mays; I Dew; S M Dietz; K Dodson; L E Doup; M Downes; S Dugan-Rocha; B C Dunkov; P Dunn; K J Durbin; C C Evangelista; C Ferraz; S Ferriera; W Fleischmann; C Fosler; A E Gabrielian; N S Garg; W M Gelbart; K Glasser; A Glodek; F Gong; J H Gorrell; Z Gu; P Guan; M Harris; N L Harris; D Harvey; T J Heiman; J R Hernandez; J Houck; D Hostin; K A Houston; T J Howland; M H Wei; C Ibegwam; M Jalali; F Kalush; G H Karpen; Z Ke; J A Kennison; K A Ketchum; B E Kimmel; C D Kodira; C Kraft; S Kravitz; D Kulp; Z Lai; P Lasko; Y Lei; A A Levitsky; J Li; Z Li; Y Liang; X Lin; X Liu; B Mattei; T C McIntosh; M P McLeod; D McPherson; G Merkulov; N V Milshina; C Mobarry; J Morris; A Moshrefi; S M Mount; M Moy; B Murphy; L Murphy; D M Muzny; D L Nelson; D R Nelson; K A Nelson; K Nixon; D R Nusskern; J M Pacleb; M Palazzolo; G S Pittman; S Pan; J Pollard; V Puri; M G Reese; K Reinert; K Remington; R D Saunders; F Scheeler; H Shen; B C Shue; I Sidén-Kiamos; M Simpson; M P Skupski; T Smith; E Spier; A C Spradling; M Stapleton; R Strong; E Sun; R Svirskas; C Tector; R Turner; E Venter; A H Wang; X Wang; Z Y Wang; D A Wassarman; G M Weinstock; J Weissenbach; S M Williams; K C Worley; D Wu; S Yang; Q A Yao; J Ye; R F Yeh; J S Zaveri; M Zhan; G Zhang; Q Zhao; L Zheng; X H Zheng; F N Zhong; W Zhong; X Zhou; S Zhu; X Zhu; H O Smith; R A Gibbs; E W Myers; G M Rubin; J C Venter
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

  3 in total
  123 in total

1.  Laterally Transferred Gene Recruited as a Venom in Parasitoid Wasps.

Authors:  Ellen O Martinson; Vincent G Martinson; Rachel Edwards; John H Werren
Journal:  Mol Biol Evol       Date:  2015-12-29       Impact factor: 16.240

2.  Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline.

Authors:  Xun Zhu; Shangbo Xie; Jean Armengaud; Wen Xie; Zhaojiang Guo; Shi Kang; Qingjun Wu; Shaoli Wang; Jixing Xia; Rongjun He; Youjun Zhang
Journal:  Mol Cell Proteomics       Date:  2016-02-22       Impact factor: 5.911

Review 3.  The expanding epigenetic landscape of non-model organisms.

Authors:  Roberto Bonasio
Journal:  J Exp Biol       Date:  2015-01-01       Impact factor: 3.312

4.  Endogenous Viral Elements Are Widespread in Arthropod Genomes and Commonly Give Rise to PIWI-Interacting RNAs.

Authors:  Anneliek M Ter Horst; Jared C Nigg; Fokke M Dekker; Bryce W Falk
Journal:  J Virol       Date:  2019-03-05       Impact factor: 5.103

Review 5.  The molecular basis of bacterial-insect symbiosis.

Authors:  Angela E Douglas
Journal:  J Mol Biol       Date:  2014-04-13       Impact factor: 5.469

Review 6.  ChIP-ping the branches of the tree: functional genomics and the evolution of eukaryotic gene regulation.

Authors:  Georgi K Marinov; Anshul Kundaje
Journal:  Brief Funct Genomics       Date:  2018-03-01       Impact factor: 4.241

7.  Earth BioGenome Project: Sequencing life for the future of life.

Authors:  Harris A Lewin; Gene E Robinson; W John Kress; William J Baker; Jonathan Coddington; Keith A Crandall; Richard Durbin; Scott V Edwards; Félix Forest; M Thomas P Gilbert; Melissa M Goldstein; Igor V Grigoriev; Kevin J Hackett; David Haussler; Erich D Jarvis; Warren E Johnson; Aristides Patrinos; Stephen Richards; Juan Carlos Castilla-Rubio; Marie-Anne van Sluys; Pamela S Soltis; Xun Xu; Huanming Yang; Guojie Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-24       Impact factor: 11.205

8.  A comparative cytogenetic study of Drosophila parasitoids (Hymenoptera, Figitidae) using DNA-binding fluorochromes and FISH with 45S rDNA probe.

Authors:  Vladimir E Gokhman; Nadezhda L Bolsheva; Shubha Govind; Olga V Muravenko
Journal:  Genetica       Date:  2016-05-05       Impact factor: 1.082

9.  Dietary zinc enrichment reduces the cadmium burden of mealworm beetle (Tenebrio molitor) larvae.

Authors:  Claudia Keil; Maria Maares; Nina Kröncke; Rainer Benning; Hajo Haase
Journal:  Sci Rep       Date:  2020-11-18       Impact factor: 4.379

10.  Cloning and functional characterizations of an apoptogenic Hid gene in the Scuttle Fly, Megaselia scalaris (Diptera; Phoridae).

Authors:  Siuk Yoo; Haylie Lam; Chansong Lee; Gyunghee Lee; Jae H Park
Journal:  Gene       Date:  2016-12-06       Impact factor: 3.688

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