Literature DB >> 23937475

The power of integrating kinetic isotope effects into the formalism of the Michaelis-Menten equation.

Judith P Klinman1.   

Abstract

The final arbiter of enzyme mechanism is the ability to establish and test a kinetic mechanism. Isotope effects play a major role in expanding the scope and insight derived from the Michaelis-Menten equation. The integration of isotope effects into the formalism of the Michaelis-Menten equation began in the 1970s and has continued until the present. This review discusses a family of eukaryotic copper proteins, including dopamine β-monooxygenase, tyramine β-monooxygenase and peptidylglycine α-amidating enzyme, which are responsible for the synthesis of neuroactive compounds, norepinephrine, octopamine and C-terminally carboxamidated peptides, respectively. The review highlights the results of studies showing how combining kinetic isotope effects with initial rate parameters permits the evaluation of: (a) the order of substrate binding to multisubstrate enzymes; (b) the magnitude of individual rate constants in complex, multistep reactions; (c) the identification of chemical intermediates; and (d) the role of nonclassical (tunnelling) behaviour in C-H activation.
© 2013 FEBS.

Entities:  

Keywords:  enzymatic C-H activation; kinetic isotope effects; mechanism of enzyme action; mechanism of two copper monooxygenases; steady-state kinetics

Mesh:

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Year:  2013        PMID: 23937475      PMCID: PMC4005594          DOI: 10.1111/febs.12477

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  57 in total

1.  The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations.

Authors:  W W CLELAND
Journal:  Biochim Biophys Acta       Date:  1963-01-08

Review 2.  Relating protein motion to catalysis.

Authors:  Sharon Hammes-Schiffer; Stephen J Benkovic
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

3.  Enzymatic C-H activation by metal-superoxo intermediates.

Authors:  J Martin Bollinger; Carsten Krebs
Journal:  Curr Opin Chem Biol       Date:  2007-03-19       Impact factor: 8.822

Review 4.  Use of isotope effects to elucidate enzyme mechanisms.

Authors:  W W Cleland
Journal:  CRC Crit Rev Biochem       Date:  1982

5.  Deduction of kinetic mechanisms from primary hydrogen isotope effects: dopamine beta-monooxygenase--a case history.

Authors:  S M Miller; J P Klinman
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

6.  Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase.

Authors:  A Kohen; R Cannio; S Bartolucci; J P Klinman
Journal:  Nature       Date:  1999-06-03       Impact factor: 49.962

7.  Dioxygen binds end-on to mononuclear copper in a precatalytic enzyme complex.

Authors:  Sean T Prigge; Betty A Eipper; Richard E Mains; L Mario Amzel
Journal:  Science       Date:  2004-05-07       Impact factor: 47.728

8.  Evidence that dioxygen and substrate activation are tightly coupled in dopamine beta-monooxygenase. Implications for the reactive oxygen species.

Authors:  John P Evans; Kyunghye Ahn; Judith P Klinman
Journal:  J Biol Chem       Date:  2003-09-09       Impact factor: 5.157

9.  Mechanism of the insect enzyme, tyramine beta-monooxygenase, reveals differences from the mammalian enzyme, dopamine beta-monooxygenase.

Authors:  Corinna R Hess; Michele M McGuirl; Judith P Klinman
Journal:  J Biol Chem       Date:  2007-11-21       Impact factor: 5.157

10.  Evidence that both protium and deuterium undergo significant tunneling in the reaction catalyzed by bovine serum amine oxidase.

Authors:  K L Grant; J P Klinman
Journal:  Biochemistry       Date:  1989-08-08       Impact factor: 3.162

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  4 in total

1.  C-H Bond Cleavage Is Rate-Limiting for Oxidative C-P Bond Cleavage by the Mixed Valence Diiron-Dependent Oxygenase PhnZ.

Authors:  Simanga R Gama; Becky Suet Yan Lo; Jacqueline Séguin; Katharina Pallitsch; Friedrich Hammerschmidt; David L Zechel
Journal:  Biochemistry       Date:  2019-05-10       Impact factor: 3.162

2.  An enzymatic platform for the synthesis of isoprenoid precursors.

Authors:  Sofia B Rodriguez; Thomas S Leyh
Journal:  PLoS One       Date:  2014-08-25       Impact factor: 3.240

Review 3.  Kinetic isotope effects and how to describe them.

Authors:  Konstantin Karandashev; Zhen-Hao Xu; Markus Meuwly; Jiří Vaníček; Jeremy O Richardson
Journal:  Struct Dyn       Date:  2017-12-13       Impact factor: 2.920

4.  Oxygen-18 Kinetic Isotope Effects of Nonheme Iron Enzymes HEPD and MPnS Support Iron(III) Superoxide as the Hydrogen Abstraction Species.

Authors:  Hui Zhu; Spencer C Peck; Florence Bonnot; Wilfred A van der Donk; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2015-08-12       Impact factor: 15.419

  4 in total

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