| Literature DB >> 23935855 |
Grażyna Kostrzewa1, Grażyna Broda, Magdalena Konarzewska, Paweł Krajewki, Rafał Płoski.
Abstract
Genetic variants of Y chromosome predispose to hypertension in rodents, whereas in humans the evidence is conflicting. Our purpose was to study the distribution of a panel of Y chromosome markers in a cohort from a cross-sectional population-based study on the prevalence of cardiovascular risk factors in Poland (WOBASZ study). The HindIII, YAP Y chromosome variants, previously shown to influence blood pressure, lipid traits or height, as well as SNPs defining main Y chromosome haplogroups, were typed in 3026, 2783 and 2652 samples, respectively. In addition, 4 subgroups (N~100 each) representing extremes of LDL concentration or blood pressure (BP) were typed for a panel of 17 STRs. The HindIII and YAP polymorphism were not associated with any of the studied traits. Analysis of the haplogroup distribution showed an association between higher HDL level and hg I-M170 (P = 0.02), higher LDL level and hg F*(xI-M170, J2-M172, K-M9) (P = 0.03) and lower BMI and hg N3-Tat (P = 0.04). Analysis of STRs did not show statistically significant differences. Since all these associations lost statistical significance after Bonferroni correction, we conclude that a major role of Y chromosome genetic variation (defined by HindIII, YAP or main Y chromosome haplogroups) in determining cardiovascular risk in Poles is unlikely.Entities:
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Year: 2013 PMID: 23935855 PMCID: PMC3723826 DOI: 10.1371/journal.pone.0068155
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Scheme of the haplogroup typing based on a phylogenetic tree published by YCC [20].
Summary table of all tested markers, PCR primers sequences with their final concentrations, composition of the PCR mixtures and thermal conditions of the amplification.
| SNP | RefSNP ID | PCR primers sequence | primers (pM) | PCR Mix | PCR conditions | PCR size (bp) | SNaPshot primers sequence |
| HindIII | rs768983 | Ellis et al. | 285 | ||||
| YAP | - | Hammer et al. | 7 | 150/455 | |||
| M9 | rs3900 | Kayser et al. | 7 | 2 mM of each dNTP (Roche), 3 mM MgCl2, 2,5 U of Taq DNA Polymerase (Fermetas) and 75 ng of template | 95°C for 4 min, (95°C for 30 s, 54°C for 30 s, and 72°C for 45 s)*45, final extension of 7 min at 72°C | 164 | |
| M17* | rs3908 | F: | 3 | 170 | 1 | ||
| R: | 2 | ||||||
| M173* | rs2032624 | F: | 10 | 81 |
| ||
| R: | |||||||
| Tat(M46)* | rs34442126 | F: | 20 | 10 mM of each dNTP, (Roche), 5 mM MgCl2 1,5 U Taq DNA Polymerase (Fermentas) and 100 ng of template | 95°C for 5 min, (95°C for 30 s, 60°C for 55 s, and 72°C for 60 s)*35 final extension of 7 min at 72°C | 115 |
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| R: | |||||||
| M170** | rs2032597 | F: | 3,5 | 119 |
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| R: | |||||||
| M172** | rs2032604 | F: | 21 | 179 |
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| R: | |||||||
| M35** | - | F: | 8 | 96 |
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| R: | |||||||
| M74 | rs2032635 | F: | 7 | 2 mM of each dNTP (Roche), 3 mM MgCl2, 2,5 U of Taq DNA Polymerase (Fermetas) and 75 ng of template | 95°C for 5 min, (95°C for 30 s, 56°C for 30 s, and 72°C for 40 s)*30, final extension of 5 min at 72°C | 151 | |
| R: | |||||||
| M89 | rs2032652 | Ke et al. | 5 | 87 |
*Triplex 1/** Triplex 2.
Distribution of studied parameters according to Y chromosome HindIII and YAP markers.
| HindIII (−) | HindIII (+) | YAP (−) | YAP (+) | |||||||||||
| N | Mean | SD | N | Mean | SD | p | N | Mean | SD | N | Mean | SD | p | |
|
| 2212 | 5.4 | 1.1 | 801 | 5.4 | 1.1 | 0.68 | 2676 | 5.4 | 1.1 | 96 | 5.4 | 1.2 | 0.67 |
|
| 2166 | 3.3 | 1.0 | 793 | 3.3 | 1.0 | 0.49 | 2626 | 3.3 | 1.0 | 96 | 3.3 | 1.0 | 0.77 |
|
| 2211 | 52.1 | 15.3 | 802 | 53.0 | 17.1 | 0.19 | 2675 | 52.2 | 15.6 | 96 | 52.6 | 17.6 | 0.81 |
|
| 2217 | 138.2 | 18.5 | 808 | 137.3 | 18.3 | 0.25 | 2686 | 138.0 | 18.5 | 96 | 136.2 | 20.5 | 0.36 |
|
| 2217 | 83.9 | 11.6 | 808 | 83.7 | 11.4 | 0.58 | 2686 | 83.8 | 11.5 | 96 | 82.8 | 11.9 | 0.38 |
|
| 2212 | 1.7 | 1.5 | 802 | 1.7 | 1.4 | 0.51 | 2676 | 1.7 | 1.4 | 96 | 1.7 | 1.5 | 0.95 |
|
| 2208 | 26.8 | 4.6 | 807 | 26.6 | 4.3 | 0.38 | 2676 | 26.8 | 4.5 | 96 | 26.5 | 4.2 | 0.60 |
|
| 2218 | 45.8 | 14.9 | 808 | 46.1 | 15.1 | 0.65 | 2687 | 45.9 | 14.9 | 96 | 46.6 | 16.1 | 0.68 |
|
| 2212 | 174.4 | 7.0 | 807 | 174.4 | 7.0 | 0.79 | 2680 | 174.4 | 7.0 | 96 | 174.0 | 7.2 | 0.57 |
|
| 2211 | 81.6 | 14.8 | 808 | 81.0 | 14.0 | 0.29 | 2680 | 81.5 | 14.7 | 96 | 80.3 | 13.7 | 0.45 |
|
| 2217 | 95.7 | 12.4 | 808 | 95.3 | 12.1 | 0.54 | 2686 | 95.6 | 12.4 | 96 | 96.2 | 11.7 | 0.63 |
|
| 2209 | 103.8 | 8.6 | 806 | 103.8 | 8.1 | 0.83 | 2676 | 103.8 | 8.5 | 96 | 103.4 | 7.8 | 0.69 |
|
| 2206 | 93.1 | 26.5 | 801 | 92.2 | 26.9 | 0.43 | 2670 | 93.1 | 26.8 | 95 | 90.2 | 16.7 | 0.30 |
Distribution of studied parameters according to Y chromosome haplogroup (only haplogroups with n>10 were analyzed).
| R1a1* | I* | R1* | E3b* | F* | J2* | N3* | |||||||||||||||
| (N = 1493–1528) | (N = 446–451) | (N = 340–355) | (N = 97) | (N = 54–57) | (N = 63–65) | (N = 83–86) | |||||||||||||||
| M | SD | P | M | SD | P | M | SD | P | M | SD | P | M | SD | P | M | SD | P | M | SD | P | |
| TC (mmol/l) | 5.4 | 1.1 | 0.41 | 5.5 | 1.1 | 0.16 | 5.4 | 1.1 | 0.57 | 5.3 | 1.2 | 0.34 | 5.6 | 1.3 | 0.19 | 5.3 | 1.1 | 0.31 | 5.3 | 1.0 | 0.64 |
| LDL (mmol/l) | 3.3 | 0.9 | 0.86 | 3.4 | 0.9 | 0.31 | 3.3 | 1.0 | 0.48 | 3.2 | 1.0 | 0.37 | 3.6 | 1.1 |
| 3.2 | 1.0 | 0.56 | 3.3 | 0.9 | 0.89 |
| HDL (mmol/l) | 51.7 | 15.0 | 0.09 | 53.8 | 17.4 |
| 52.2 | 15.5 | 0.96 | 53.3 | 18.8 | 0.46 | 50.1 | 11.9 | 0.32 | 51.6 | 15.3 | 0.76 | 52.4 | 17.5 | 0.89 |
| BP sys. (mmHg) | 137.8 | 18.1 | 0.60 | 137.3 | 17.8 | 0.41 | 139.5 | 20.3 | 0.11 | 136.3 | 20.5 | 0.35 | 136.4 | 20.0 | 0.51 | 136.7 | 19.6 | 0.56 | 140.8 | 17.9 | 0.15 |
| BP dias. (mmHg) | 83.6 | 11.4 | 0.29 | 83.9 | 11.7 | 0.88 | 84.7 | 12.0 | 0.13 | 82.7 | 11.8 | 0.29 | 83.9 | 10.9 | 0.97 | 83.0 | 11.7 | 0.53 | 84.8 | 12.0 | 0.42 |
| TG (mmol/l) | 1.7 | 1.5 | 0.85 | 1.6 | 1.1 | 0.30 | 1.8 | 1.7 | 0.11 | 1.7 | 1.5 | 0.69 | 1.8 | 1.3 | 0.76 | 1.6 | 1.0 | 0.38 | 1.8 | 2.6 | 0.46 |
| BMI | 26.8 | 4.6 | 0.63 | 26.7 | 4.3 | 0.90 | 27.0 | 4.7 | 0.17 | 26.3 | 4.1 | 0.36 | 26.6 | 4.2 | 0.79 | 26.2 | 4.2 | 0.36 | 25.8 | 3.9 |
|
| Age (ys.) | 45.8 | 14.9 | 0.57 | 46.3 | 15.0 | 0.60 | 46.4 | 14.7 | 0.53 | 46.3 | 16.1 | 0.84 | 44.5 | 14.6 | 0.43 | 44.0 | 15.7 | 0.28 | 45.7 | 15.5 | 0.84 |
| Height(cm) | 174.4 | 7.2 | 0.58 | 173.9 | 6.8 | 0.21 | 174.1 | 7.0 | 0.66 | 174.0 | 7.4 | 0.68 | 174.7 | 6.8 | 0.71 | 175.7 | 5.8 | 0.10 | 175.3 | 7.0 | 0.22 |
| Weigh kg) | 81.5 | 15.2 | 0.38 | 80.8 | 13.7 | 0.42 | 82.0 | 15.4 | 0.32 | 79.8 | 13.3 | 0.29 | 80.8 | 11.3 | 0.78 | 81.2 | 14.6 | 0.94 | 79.3 | 13.8 | 0.19 |
| Waist (cm) | 95.6 | 12.6 | 0.83 | 95.4 | 12.0 | 0.77 | 96.0 | 12.8 | 0.52 | 95.9 | 11.5 | 0.80 | 95.7 | 11.1 | 0.93 | 94.6 | 12.1 | 0.56 | 93.9 | 12.1 | 0.21 |
| Hips circ. (cm) | 103.8 | 8.6 | 0.69 | 103.6 | 8.1 | 0.63 | 104.0 | 9.1 | 0.61 | 103.5 | 7.8 | 0.73 | 104.2 | 7.2 | 0.72 | 103.4 | 7.5 | 0.70 | 102.7 | 7.2 | 0.26 |
| Glucose (mg%) | 92.3 | 24.8 | 0.23 | 92.9 | 27.8 | 0.94 | 95.1 | 31.7 | 0.09 | 90.4 | 22.6 | 0.35 | 93.4 | 28.6 | 0.88 | 95.1 | 35.2 | 0.50 | 91.1 | 21.9 | 0.53 |
TC –total cholesterol, M – Mean, SD standard deviation, P - p value (t-test vs. all other haplogroups), BP blood pressure, TG-triglycerides