Literature DB >> 23928056

Cancer gene discovery: exploiting insertional mutagenesis.

Marco Ranzani1, Stefano Annunziato, David J Adams, Eugenio Montini.   

Abstract

Insertional mutagenesis has been used as a functional forward genetics screen for the identification of novel genes involved in the pathogenesis of human cancers. Different insertional mutagens have been successfully used to reveal new cancer genes. For example, retroviruses are integrating viruses with the capacity to induce the deregulation of genes in the neighborhood of the insertion site. Retroviruses have been used for more than 30 years to identify cancer genes in the hematopoietic system and mammary gland. Similarly, another tool that has revolutionized cancer gene discovery is the cut-and-paste transposons. These DNA elements have been engineered to contain strong promoters and stop cassettes that may function to perturb gene expression upon integration proximal to genes. In addition, complex mouse models characterized by tissue-restricted activity of transposons have been developed to identify oncogenes and tumor suppressor genes that control the development of a wide range of solid tumor types, extending beyond those tissues accessible using retrovirus-based approaches. Most recently, lentiviral vectors have appeared on the scene for use in cancer gene screens. Lentiviral vectors are replication-defective integrating vectors that have the advantage of being able to infect nondividing cells, in a wide range of cell types and tissues. In this review, we describe the various insertional mutagens focusing on their advantages/limitations, and we discuss the new and promising tools that will improve the insertional mutagenesis screens of the future.

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Year:  2013        PMID: 23928056      PMCID: PMC3836224          DOI: 10.1158/1541-7786.MCR-13-0244

Source DB:  PubMed          Journal:  Mol Cancer Res        ISSN: 1541-7786            Impact factor:   5.852


  112 in total

1.  Identification of potential human oncogenes by mapping the common viral integration sites in avian nephroblastoma.

Authors:  Petr Pajer; Vladimír Pecenka; Jarmila Králová; Vít Karafiát; Dana Průková; Zdena Zemanová; Roman Kodet; Michal Dvorák
Journal:  Cancer Res       Date:  2006-01-01       Impact factor: 12.701

2.  Cancer gene discovery using the Sleeping Beauty transposon.

Authors:  Timothy K Starr; David A Largaespada
Journal:  Cell Cycle       Date:  2005-12-05       Impact factor: 4.534

3.  Leukaemia disease genes: large-scale cloning and pathway predictions.

Authors:  J Li; H Shen; K L Himmel; A J Dupuy; D A Largaespada; T Nakamura; J D Shaughnessy; N A Jenkins; N G Copeland
Journal:  Nat Genet       Date:  1999-11       Impact factor: 38.330

4.  Efficient transposition of the piggyBac (PB) transposon in mammalian cells and mice.

Authors:  Sheng Ding; Xiaohui Wu; Gang Li; Min Han; Yuan Zhuang; Tian Xu
Journal:  Cell       Date:  2005-08-12       Impact factor: 41.582

5.  Tumorigenic potential of a recombinant retrovirus containing sequences from Moloney murine leukemia virus and feline leukemia virus.

Authors:  C R Starkey; P A Lobelle-Rich; S W Granger; S Granger; B K Brightman; H Fan; L S Levy
Journal:  J Virol       Date:  1998-02       Impact factor: 5.103

6.  Identification of candidate cancer-causing genes in mouse brain tumors by retroviral tagging.

Authors:  Fredrik K Johansson; Josefin Brodd; Charlotta Eklöf; Maria Ferletta; Göran Hesselager; Carl-Fredrik Tiger; Lene Uhrbom; Bengt Westermark
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-23       Impact factor: 11.205

7.  MMTV insertional mutagenesis identifies genes, gene families and pathways involved in mammary cancer.

Authors:  Vassiliki Theodorou; Melanie A Kimm; Mandy Boer; Lodewyk Wessels; Wendy Theelen; Jos Jonkers; John Hilkens
Journal:  Nat Genet       Date:  2007-04-29       Impact factor: 38.330

8.  Quantitative expression profiling guided by common retroviral insertion sites reveals novel and cell type specific cancer genes in leukemia.

Authors:  Martin Sauvageau; Michelle Miller; Sébastien Lemieux; Julie Lessard; Josée Hébert; Guy Sauvageau
Journal:  Blood       Date:  2007-09-28       Impact factor: 22.113

9.  Detecting statistically significant common insertion sites in retroviral insertional mutagenesis screens.

Authors:  Jeroen de Ridder; Anthony Uren; Jaap Kool; Marcel Reinders; Lodewyk Wessels
Journal:  PLoS Comput Biol       Date:  2006-10-24       Impact factor: 4.475

10.  Extensive somatic L1 retrotransposition in colorectal tumors.

Authors:  Szilvia Solyom; Adam D Ewing; Eric P Rahrmann; Tara Doucet; Heather H Nelson; Michael B Burns; Reuben S Harris; David F Sigmon; Alex Casella; Bracha Erlanger; Sarah Wheelan; Kyle R Upton; Ruchi Shukla; Geoffrey J Faulkner; David A Largaespada; Haig H Kazazian
Journal:  Genome Res       Date:  2012-09-11       Impact factor: 9.043

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  35 in total

1.  Lentiviral vector-mediated insertional mutagenesis screen identifies genes that influence androgen independent prostate cancer progression and predict clinical outcome.

Authors:  Arun K Nalla; Theodore F Williams; Casey P Collins; Dustin T Rae; Grant D Trobridge
Journal:  Mol Carcinog       Date:  2015-10-29       Impact factor: 4.784

Review 2.  The Emerging Role of Adhesion GPCRs in Cancer.

Authors:  Abanoub A Gad; Nariman Balenga
Journal:  ACS Pharmacol Transl Sci       Date:  2020-01-13

Review 3.  Decoding pluripotency: Genetic screens to interrogate the acquisition, maintenance, and exit of pluripotency.

Authors:  Qing V Li; Bess P Rosen; Danwei Huangfu
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2019-08-13

4.  FOXP1 potentiates Wnt/β-catenin signaling in diffuse large B cell lymphoma.

Authors:  Matthew P Walker; Charles M Stopford; Maria Cederlund; Fang Fang; Christopher Jahn; Alex D Rabinowitz; Dennis Goldfarb; David M Graham; Feng Yan; Allison M Deal; Yuri Fedoriw; Kristy L Richards; Ian J Davis; Gilbert Weidinger; Blossom Damania; Michael B Major
Journal:  Sci Signal       Date:  2015-02-03       Impact factor: 8.192

5.  Modelling acute myeloid leukemia (AML): What's new? A transition from the classical to the modern.

Authors:  Annachiara Dozzo; Aoife Galvin; Jae-Won Shin; Santo Scalia; Caitriona M O'Driscoll; Katie B Ryan
Journal:  Drug Deliv Transl Res       Date:  2022-08-05       Impact factor: 5.671

6.  Versatile targeting system for lentiviral vectors involving biotinylated targeting molecules.

Authors:  Kathy Situ; Bernadette Anne Chua; Song Yi Bae; Aaron Samuel Meyer; Kouki Morizono
Journal:  Virology       Date:  2018-10-02       Impact factor: 3.616

Review 7.  Sites of retroviral DNA integration: From basic research to clinical applications.

Authors:  Erik Serrao; Alan N Engelman
Journal:  Crit Rev Biochem Mol Biol       Date:  2015-10-28       Impact factor: 8.250

8.  VISPA: a computational pipeline for the identification and analysis of genomic vector integration sites.

Authors:  Andrea Calabria; Simone Leo; Fabrizio Benedicenti; Daniela Cesana; Giulio Spinozzi; Massimilano Orsini; Stefania Merella; Elia Stupka; Gianluigi Zanetti; Eugenio Montini
Journal:  Genome Med       Date:  2014-09-03       Impact factor: 11.117

9.  A novel mouse model identifies cooperating mutations and therapeutic targets critical for chronic myeloid leukemia progression.

Authors:  George Giotopoulos; Louise van der Weyden; Hikari Osaki; Alistair G Rust; Paolo Gallipoli; Eshwar Meduri; Sarah J Horton; Wai-In Chan; Donna Foster; Rab K Prinjha; John E Pimanda; Daniel G Tenen; George S Vassiliou; Steffen Koschmieder; David J Adams; Brian J P Huntly
Journal:  J Exp Med       Date:  2015-08-24       Impact factor: 14.307

10.  Lentiviral vector-based insertional mutagenesis identifies genes involved in the resistance to targeted anticancer therapies.

Authors:  Marco Ranzani; Stefano Annunziato; Andrea Calabria; Stefano Brasca; Fabrizio Benedicenti; Pierangela Gallina; Luigi Naldini; Eugenio Montini
Journal:  Mol Ther       Date:  2014-09-08       Impact factor: 11.454

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