Literature DB >> 23927905

Recursive calibration of the fiber response function for spherical deconvolution of diffusion MRI data.

Chantal M W Tax1, Ben Jeurissen2, Sjoerd B Vos3, Max A Viergever3, Alexander Leemans3.   

Abstract

There is accumulating evidence that at current acquisition resolutions for diffusion-weighted (DW) MRI, the vast majority of white matter voxels contains "crossing fibers", referring to complex fiber configurations in which multiple and distinctly differently oriented fiber populations exist. Spherical deconvolution based techniques are appealing to characterize this DW intra-voxel signal heterogeneity, as they provide a balanced trade-off between constraints on the required hardware performance and acquisition time on the one hand, and the reliability of the reconstructed fiber orientation distribution function (fODF) on the other hand. Recent findings, however, suggest that an inaccurate calibration of the response function (RF), which represents the DW signal profile of a single fiber orientation, can lead to the detection of spurious fODF peaks which, in turn, can have a severe impact on tractography results. Currently, the computation of this RF is either model-based or estimated from selected voxels that have a fractional anisotropy (FA) value above a predefined threshold. For both approaches, however, there are user-defined settings that affect the RF and, consequently, fODF estimation and tractography. Moreover, these settings still rely on the second-rank diffusion tensor, which may not be the appropriate model, especially at high b-values. In this work, we circumvent these issues for RF calibration by excluding "crossing fibers" voxels in a recursive framework. Our approach is evaluated with simulations and applied to in vivo and ex vivo data sets with different acquisition settings. The results demonstrate that with the proposed method the RF can be calibrated in a robust and automated way without needing to define ad-hoc FA threshold settings. Our framework facilitates the use of spherical deconvolution approaches in data sets in which it is not straightforward to define RF settings a priori.
© 2013.

Keywords:  Constrained spherical deconvolution; Diffusion MRI; Fiber orientation distribution function; Fiber response function; Tractography

Mesh:

Year:  2013        PMID: 23927905     DOI: 10.1016/j.neuroimage.2013.07.067

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  65 in total

1.  Histologically derived fiber response functions for diffusion MRI vary across white matter fibers-An ex vivo validation study in the squirrel monkey brain.

Authors:  Kurt G Schilling; Yurui Gao; Iwona Stepniewska; Vaibhav Janve; Bennett A Landman; Adam W Anderson
Journal:  NMR Biomed       Date:  2019-03-25       Impact factor: 4.044

2.  Hemispheric lateralization of topological organization in structural brain networks.

Authors:  Karen Caeyenberghs; Alexander Leemans
Journal:  Hum Brain Mapp       Date:  2014-04-07       Impact factor: 5.038

3.  Convexity-constrained and nonnegativity-constrained spherical factorization in diffusion-weighted imaging.

Authors:  Daan Christiaens; Stefan Sunaert; Paul Suetens; Frederik Maes
Journal:  Neuroimage       Date:  2016-10-27       Impact factor: 6.556

4.  Active delineation of Meyer's loop using oriented priors through MAGNEtic tractography (MAGNET).

Authors:  Maxime Chamberland; Benoit Scherrer; Sanjay P Prabhu; Joseph Madsen; David Fortin; Kevin Whittingstall; Maxime Descoteaux; Simon K Warfield
Journal:  Hum Brain Mapp       Date:  2016-09-20       Impact factor: 5.038

5.  Probing region-specific microstructure of human cortical areas using high angular and spatial resolution diffusion MRI.

Authors:  Manisha Aggarwal; David W Nauen; Juan C Troncoso; Susumu Mori
Journal:  Neuroimage       Date:  2014-10-31       Impact factor: 6.556

6.  Decoupling of structural and functional brain connectivity in older adults with white matter hyperintensities.

Authors:  Y D Reijmer; A P Schultz; A Leemans; M J O'Sullivan; M E Gurol; R Sperling; S M Greenberg; A Viswanathan; T Hedden
Journal:  Neuroimage       Date:  2015-05-27       Impact factor: 6.556

7.  Quantifying the brain's sheet structure with normalized convolution.

Authors:  Chantal M W Tax; Carl-Fredrik Westin; Tom Dela Haije; Andrea Fuster; Max A Viergever; Evan Calabrese; Luc Florack; Alexander Leemans
Journal:  Med Image Anal       Date:  2017-04-04       Impact factor: 8.545

8.  Denoising of diffusion MRI using random matrix theory.

Authors:  Jelle Veraart; Dmitry S Novikov; Daan Christiaens; Benjamin Ades-Aron; Jan Sijbers; Els Fieremans
Journal:  Neuroimage       Date:  2016-08-11       Impact factor: 6.556

9.  Sheet Probability Index (SPI): Characterizing the geometrical organization of the white matter with diffusion MRI.

Authors:  Chantal M W Tax; Tom Dela Haije; Andrea Fuster; Carl-Fredrik Westin; Max A Viergever; Luc Florack; Alexander Leemans
Journal:  Neuroimage       Date:  2016-07-25       Impact factor: 6.556

10.  Trade-off between angular and spatial resolutions in in vivo fiber tractography.

Authors:  Sjoerd B Vos; Murat Aksoy; Zhaoying Han; Samantha J Holdsworth; Julian Maclaren; Max A Viergever; Alexander Leemans; Roland Bammer
Journal:  Neuroimage       Date:  2016-01-14       Impact factor: 6.556

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