Literature DB >> 23917626

Genomic imprinting and parent-of-origin effects on complex traits.

Heather A Lawson1, James M Cheverud, Jason B Wolf.   

Abstract

Parent-of-origin effects occur when the phenotypic effect of an allele depends on whether it is inherited from the mother or the father. Several phenomena can cause parent-of-origin effects, but the best characterized is parent-of-origin-dependent gene expression associated with genomic imprinting. The development of new mapping approaches applied to the growing abundance of genomic data has demonstrated that imprinted genes can be important contributors to complex trait variation. Therefore, to understand the genetic architecture and evolution of complex traits, including complex diseases and traits of agricultural importance, it is crucial to account for these parent-of-origin effects. Here, we discuss patterns of phenotypic variation associated with imprinting, evidence supporting its role in complex trait variation and approaches for identifying its molecular signatures.

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Year:  2013        PMID: 23917626      PMCID: PMC3926806          DOI: 10.1038/nrg3543

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  78 in total

1.  Model for mapping imprinted quantitative trait loci in an inbred F2 design.

Authors:  Yuehua Cui; Qing Lu; James M Cheverud; Ramon C Littell; Rongling Wu
Journal:  Genomics       Date:  2006-01-18       Impact factor: 5.736

2.  A statistical model for dissecting genomic imprinting through genetic mapping.

Authors:  Yuehua Cui; James M Cheverud; Rongling Wu
Journal:  Genetica       Date:  2006-09-06       Impact factor: 1.082

3.  Zac1 regulates an imprinted gene network critically involved in the control of embryonic growth.

Authors:  Annie Varrault; Charlotte Gueydan; Annie Delalbre; Anja Bellmann; Souheir Houssami; Cindy Aknin; Dany Severac; Laetitia Chotard; Malik Kahli; Anne Le Digarcher; Paul Pavlidis; Laurent Journot
Journal:  Dev Cell       Date:  2006-11       Impact factor: 12.270

Review 4.  A mechanistic view of genomic imprinting.

Authors:  Ky Sha
Journal:  Annu Rev Genomics Hum Genet       Date:  2008       Impact factor: 8.929

5.  An imprinted QTL with major effect on muscle mass and fat deposition maps to the IGF2 locus in pigs.

Authors:  C Nezer; L Moreau; B Brouwers; W Coppieters; J Detilleux; R Hanset; L Karim; A Kvasz; P Leroy; M Georges
Journal:  Nat Genet       Date:  1999-02       Impact factor: 38.330

6.  Polar overdominance at the ovine callipyge locus.

Authors:  N E Cockett; S P Jackson; T L Shay; F Farnir; S Berghmans; G D Snowder; D M Nielsen; M Georges
Journal:  Science       Date:  1996-07-12       Impact factor: 47.728

7.  Genome-wide prediction of imprinted murine genes.

Authors:  Philippe P Luedi; Alexander J Hartemink; Randy L Jirtle
Journal:  Genome Res       Date:  2005-06       Impact factor: 9.043

8.  Maternal germline-specific effect of DNA ligase I on CTG/CAG instability.

Authors:  Stéphanie Tomé; Gagan B Panigrahi; Arturo López Castel; Laurent Foiry; David W Melton; Geneviève Gourdon; Christopher E Pearson
Journal:  Hum Mol Genet       Date:  2011-03-05       Impact factor: 6.150

9.  DNA sequence polymorphisms in a panel of eight candidate bovine imprinted genes and their association with performance traits in Irish Holstein-Friesian cattle.

Authors:  David A Magee; Klaudia M Sikora; Erik W Berkowicz; Donagh P Berry; Dawn J Howard; Michael P Mullen; Ross D Evans; Charles Spillane; David E MacHugh
Journal:  BMC Genet       Date:  2010-10-13       Impact factor: 2.797

10.  The imprinted DLK1-MEG3 gene region on chromosome 14q32.2 alters susceptibility to type 1 diabetes.

Authors:  Chris Wallace; Deborah J Smyth; Meeta Maisuria-Armer; Neil M Walker; John A Todd; David G Clayton
Journal:  Nat Genet       Date:  2009-12-06       Impact factor: 38.330

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  90 in total

1.  Analysis of case-parent trios for imprinting effect using a loglinear model with adjustment for sex-of-parent-specific transmission ratio distortion.

Authors:  Lam Opal Huang; Claire Infante-Rivard; Aurélie Labbe
Journal:  Hum Genet       Date:  2017-06-19       Impact factor: 4.132

Review 2.  Imprinted Zac1 in neural stem cells.

Authors:  Guillaume Daniel; Udo Schmidt-Edelkraut; Dietmar Spengler; Anke Hoffmann
Journal:  World J Stem Cells       Date:  2015-03-26       Impact factor: 5.326

3.  The landscape of genomic imprinting across diverse adult human tissues.

Authors:  Yael Baran; Meena Subramaniam; Anne Biton; Taru Tukiainen; Emily K Tsang; Manuel A Rivas; Matti Pirinen; Maria Gutierrez-Arcelus; Kevin S Smith; Kim R Kukurba; Rui Zhang; Celeste Eng; Dara G Torgerson; Cydney Urbanek; Jin Billy Li; Jose R Rodriguez-Santana; Esteban G Burchard; Max A Seibold; Daniel G MacArthur; Stephen B Montgomery; Noah A Zaitlen; Tuuli Lappalainen
Journal:  Genome Res       Date:  2015-05-07       Impact factor: 9.043

Review 4.  The role of environmental exposures and the epigenome in health and disease.

Authors:  Bambarendage P U Perera; Christopher Faulk; Laurie K Svoboda; Jaclyn M Goodrich; Dana C Dolinoy
Journal:  Environ Mol Mutagen       Date:  2019-06-20       Impact factor: 3.216

5.  Intergenerational transmission of trauma effects: putative role of epigenetic mechanisms.

Authors:  Rachel Yehuda; Amy Lehrner
Journal:  World Psychiatry       Date:  2018-10       Impact factor: 49.548

Review 6.  Minireview: transgenerational epigenetic inheritance: focus on endocrine disrupting compounds.

Authors:  Emilie F Rissman; Mazhar Adli
Journal:  Endocrinology       Date:  2014-06-02       Impact factor: 4.736

7.  Parent-of-origin effects of A1CF and AGO2 on testicular germ-cell tumors, testicular abnormalities, and fertilization bias.

Authors:  Delphine Carouge; Valerie Blanc; Sue E Knoblaugh; Robert J Hunter; Nicholas O Davidson; Joseph H Nadeau
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-31       Impact factor: 11.205

8.  Sex-specific plasticity across generations I: Maternal and paternal effects on sons and daughters.

Authors:  Jennifer K Hellmann; Syed Abbas Bukhari; Jack Deno; Alison M Bell
Journal:  J Anim Ecol       Date:  2020-11-15       Impact factor: 5.091

9.  A parent-of-origin analysis of paternal genetic variants and increased risk of conotruncal heart defects.

Authors:  Wendy N Nembhard; Xinyu Tang; Jingyun Li; Stewart L MacLeod; Joseph Levy; Gerald B Schaefer; Charlotte A Hobbs
Journal:  Am J Med Genet A       Date:  2018-02-05       Impact factor: 2.802

10.  Genetic background influences the impact of KLOTHO deficiency.

Authors:  Jawad S Salloum; Diane E Garsetti; Melissa B Rogers
Journal:  Physiol Genomics       Date:  2020-09-21       Impact factor: 3.107

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