Literature DB >> 23914255

A Portable, Pressure Driven, Room Temperature Nucleic Acid Extraction and Storage System for Point of Care Molecular Diagnostics.

Samantha Byrnes1, Andy Fan, Jacob Trueb, Francis Jareczek, Mark Mazzochette, Andre Sharon, Alexis F Sauer-Budge, Catherine M Klapperich.   

Abstract

Many new and exciting portable HIV viral load testing technologies are emerging for use in global medicine. While the potential to provide fast, isothermal, and quantitative molecular diagnostic information to clinicians in the field will soon be a reality, many of these technologies lack a robust front end for sample clean up and nucleic acid preparation. Such a technology would enable many different downstream molecular assays. Here, we present a portable system for centrifuge-free room temperature nucleic acid extraction from small volumes of whole blood (70 µL), using only thermally stable reagents compatible with storage and transport in low resource settings. Quantitative reverse transcriptase polymerase chain reaction (qRT-PCR) analysis of simulated samples demonstrate a lower limit of detection of 1000 copies/ml, with the ability to detect differences in viral load across four orders of magnitude. The system can also be used to store extracted RNA on detachable cartridges for up to one week at ambient temperature, and can be operated using only hand generated air pressure.

Entities:  

Keywords:  DNA; HIV; PCR; RNA; blood; diagnostics; point of care; solid phase extraction

Year:  2013        PMID: 23914255      PMCID: PMC3727300          DOI: 10.1039/C3AY40162F

Source DB:  PubMed          Journal:  Anal Methods        ISSN: 1759-9660            Impact factor:   2.896


  37 in total

1.  Toward a microchip-based solid-phase extraction method for isolation of nucleic acids.

Authors:  Kelley A Wolfe; Michael C Breadmore; Jerome P Ferrance; Mary E Power; John F Conroy; Pamela M Norris; James P Landers
Journal:  Electrophoresis       Date:  2002-03       Impact factor: 3.535

2.  Nucleic acid purification using microfabricated silicon structures.

Authors:  Nathaniel C Cady; Scott Stelick; Carl A Batt
Journal:  Biosens Bioelectron       Date:  2003-10-30       Impact factor: 10.618

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Journal:  J Clin Microbiol       Date:  1990-03       Impact factor: 5.948

Review 4.  Point-of-care diagnostics for global health.

Authors:  Paul Yager; Gonzalo J Domingo; John Gerdes
Journal:  Annu Rev Biomed Eng       Date:  2008       Impact factor: 9.590

5.  Microchip-based solid-phase purification of RNA from biological samples.

Authors:  Kristin A Hagan; Joan M Bienvenue; Christopher A Moskaluk; James P Landers
Journal:  Anal Chem       Date:  2008-10-15       Impact factor: 6.986

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Authors:  P N Hengen
Journal:  Trends Biochem Sci       Date:  1996-06       Impact factor: 13.807

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Authors:  S A Fiscus; D Brambilla; L Grosso; J Schock; M Cronin
Journal:  J Clin Microbiol       Date:  1998-01       Impact factor: 5.948

8.  DNA extraction using a tetramethyl orthosilicate-grafted photopolymerized monolithic solid phase.

Authors:  Jian Wen; Christelle Guillo; Jerome P Ferrance; James P Landers
Journal:  Anal Chem       Date:  2006-03-01       Impact factor: 6.986

9.  Thermoplastic microfluidic device for on-chip purification of nucleic acids for disposable diagnostics.

Authors:  Arpita Bhattacharyya; Catherine M Klapperich
Journal:  Anal Chem       Date:  2006-02-01       Impact factor: 6.986

10.  Cost analysis of centralized viral load testing for antiretroviral therapy monitoring in Nicaragua, a low-HIV prevalence, low-resource setting.

Authors:  Jay Gerlach; Magda Sequeira; Vivian Alvarado; Christian Cerpas; Angel Balmaseda; Alcides Gonzalez; Tala de Los Santos; Carol E Levin; Juan Jose Amador; Gonzalo J Domingo
Journal:  J Int AIDS Soc       Date:  2010-11-05       Impact factor: 5.396

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  11 in total

1.  DNA storage under high temperature conditions does not affect performance in human leukocyte antigen genotyping via next-generation sequencing (DNA integrity maintained in extreme conditions).

Authors:  Shana L McDevitt; Michael E Hogan; Derek J Pappas; Lily Y Wong; Janelle A Noble
Journal:  Biopreserv Biobank       Date:  2014-12       Impact factor: 2.300

2.  Rapid, Safe, and Simple Manual Bedside Nucleic Acid Extraction for the Detection of Virus in Whole Blood Samples.

Authors:  Maiken W Rosenstierne; Christopher E Jensen; Anders Fomsgaard
Journal:  J Vis Exp       Date:  2018-06-30       Impact factor: 1.355

3.  A microfluidic device for dry sample preservation in remote settings.

Authors:  Stefano Begolo; Feng Shen; Rustem F Ismagilov
Journal:  Lab Chip       Date:  2013-11-21       Impact factor: 6.799

Review 4.  Advancing the speed, sensitivity and accuracy of biomolecular detection using multi-length-scale engineering.

Authors:  Shana O Kelley; Chad A Mirkin; David R Walt; Rustem F Ismagilov; Mehmet Toner; Edward H Sargent
Journal:  Nat Nanotechnol       Date:  2014-12       Impact factor: 39.213

5.  Moving toward rapid and low-cost point-of-care molecular diagnostics with a repurposed 3D printer and RPA.

Authors:  Kamfai Chan; Pui-Yan Wong; Chaitanya Parikh; Season Wong
Journal:  Anal Biochem       Date:  2018-01-12       Impact factor: 3.365

6.  Paper-based molecular diagnostic for Chlamydia trachomatis.

Authors:  Jacqueline C Linnes; Andy Fan; Natalia M Rodriguez; Bertrand Lemieux; Huimin Kong; Catherine M Klapperich
Journal:  RSC Adv       Date:  2014-01-01       Impact factor: 3.361

7.  Non-instrumented incubation of a recombinase polymerase amplification assay for the rapid and sensitive detection of proviral HIV-1 DNA.

Authors:  Lorraine Lillis; Dara Lehman; Mitra C Singhal; Jason Cantera; Jered Singleton; Paul Labarre; Anthony Toyama; Olaf Piepenburg; Mathew Parker; Robert Wood; Julie Overbaugh; David S Boyle
Journal:  PLoS One       Date:  2014-09-29       Impact factor: 3.240

Review 8.  Simple Approaches to Minimally-Instrumented, Microfluidic-Based Point-of-Care Nucleic Acid Amplification Tests.

Authors:  Michael G Mauk; Jinzhao Song; Changchun Liu; Haim H Bau
Journal:  Biosensors (Basel)       Date:  2018-02-26

9.  Low concentration DNA extraction and recovery using a silica solid phase.

Authors:  Constantinos Katevatis; Andy Fan; Catherine M Klapperich
Journal:  PLoS One       Date:  2017-05-05       Impact factor: 3.240

10.  Low-Cost 3D Printers Enable High-Quality and Automated Sample Preparation and Molecular Detection.

Authors:  Kamfai Chan; Mauricio Coen; Justin Hardick; Charlotte A Gaydos; Kah-Yat Wong; Clayton Smith; Scott A Wilson; Siva Praneeth Vayugundla; Season Wong
Journal:  PLoS One       Date:  2016-06-30       Impact factor: 3.240

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