Literature DB >> 29339059

Moving toward rapid and low-cost point-of-care molecular diagnostics with a repurposed 3D printer and RPA.

Kamfai Chan1, Pui-Yan Wong1, Chaitanya Parikh1, Season Wong2.   

Abstract

Traditionally, the majority of nucleic acid amplification-based molecular diagnostic tests are done in centralized settings. In recent years, point-of-care tests have been developed for use in low-resource settings away from central laboratories. While most experts agree that point-of-care molecular tests are greatly needed, their availability as cost-effective and easy-to-operate tests remains an unmet goal. In this article, we discuss our efforts to develop a recombinase polymerase amplification reaction-based test that will meet these criteria. First, we describe our efforts in repurposing a low-cost 3D printer as a platform that can carry out medium-throughput, rapid, and high-performing nucleic acid extraction. Next, we address how these purified templates can be rapidly amplified and analyzed using the 3D printer's heated bed or the deconstructed, low-cost thermal cycler we have developed. In both approaches, real-time isothermal amplification and detection of template DNA or RNA can be accomplished using a low-cost portable detector or smartphone camera. Last, we demonstrate the capability of our technologies using foodborne pathogens and the Zika virus. Our low-cost approach does not employ complicated and high-cost components, making it suitable for resource-limited settings. When integrated and commercialized, it will offer simple sample-to-answer molecular diagnostics.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  3D printers; Foodborne pathogens; Low-resource settings; Nucleic acid extraction; Recombinase polymerase amplification; Zika virus

Mesh:

Substances:

Year:  2018        PMID: 29339059      PMCID: PMC5849525          DOI: 10.1016/j.ab.2018.01.008

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  42 in total

Review 1.  Point-of-care diagnostics for global health.

Authors:  Paul Yager; Gonzalo J Domingo; John Gerdes
Journal:  Annu Rev Biomed Eng       Date:  2008       Impact factor: 9.590

2.  Nucleic acid extraction techniques and application to the microchip.

Authors:  Carol W Price; Daniel C Leslie; James P Landers
Journal:  Lab Chip       Date:  2009-06-22       Impact factor: 6.799

Review 3.  Paper-based sample-to-answer molecular diagnostic platform for point-of-care diagnostics.

Authors:  Jane Ru Choi; Ruihua Tang; ShuQi Wang; Wan Abu Bakar Wan Abas; Belinda Pingguan-Murphy; Feng Xu
Journal:  Biosens Bioelectron       Date:  2015-07-02       Impact factor: 10.618

4.  One-step purification of nucleic acid for gene expression analysis via Immiscible Filtration Assisted by Surface Tension (IFAST).

Authors:  Scott M Berry; Elaine T Alarid; David J Beebe
Journal:  Lab Chip       Date:  2011-03-21       Impact factor: 6.799

5.  Mechanical disruption of lysis-resistant bacterial cells by use of a miniature, low-power, disposable device.

Authors:  Peter E Vandeventer; Kris M Weigel; Jose Salazar; Barbara Erwin; Bruce Irvine; Robert Doebler; Ali Nadim; Gerard A Cangelosi; Angelika Niemz
Journal:  J Clin Microbiol       Date:  2011-05-04       Impact factor: 5.948

6.  A Rapid and Low-Cost PCR Thermal Cycler for Low Resource Settings.

Authors:  Grace Wong; Isaac Wong; Kamfai Chan; Yicheng Hsieh; Season Wong
Journal:  PLoS One       Date:  2015-07-06       Impact factor: 3.240

7.  Parallel RNA extraction using magnetic beads and a droplet array.

Authors:  Xu Shi; Chun-Hong Chen; Weimin Gao; Shih-Hui Chao; Deirdre R Meldrum
Journal:  Lab Chip       Date:  2015-02-21       Impact factor: 6.799

8.  A Rapid and Low-Cost PCR Thermal Cycler for Infectious Disease Diagnostics.

Authors:  Kamfai Chan; Pui-Yan Wong; Peter Yu; Justin Hardick; Kah-Yat Wong; Scott A Wilson; Tiffany Wu; Zoe Hui; Charlotte Gaydos; Season S Wong
Journal:  PLoS One       Date:  2016-02-12       Impact factor: 3.240

9.  Low cost extraction and isothermal amplification of DNA for infectious diarrhea diagnosis.

Authors:  Shichu Huang; Jaephil Do; Madhumita Mahalanabis; Andy Fan; Lei Zhao; Lisa Jepeal; Satish K Singh; Catherine M Klapperich
Journal:  PLoS One       Date:  2013-03-28       Impact factor: 3.240

10.  Rapid, Affordable and Portable Medium-Throughput Molecular Device for Zika Virus.

Authors:  Kamfai Chan; Scott C Weaver; Pui-Yan Wong; Sherly Lie; Eryu Wang; Mathilde Guerbois; Siva Praneeth Vayugundla; Season Wong
Journal:  Sci Rep       Date:  2016-12-09       Impact factor: 4.379

View more
  10 in total

1.  Diagnostics in space: will zero gravity add weight to new advances?

Authors:  Season Wong
Journal:  Expert Rev Mol Diagn       Date:  2019-12-02       Impact factor: 5.225

Review 2.  Interfacing Pathogen Detection with Smartphones for Point-of-Care Applications.

Authors:  Xiong Ding; Michael G Mauk; Kun Yin; Karteek Kadimisetty; Changchun Liu
Journal:  Anal Chem       Date:  2018-12-03       Impact factor: 6.986

3.  Comparison of Design Approaches for Low-Cost Sampling Mechanisms in Open-Source Chemical Instrumentation.

Authors:  Greggory Murray; Samuel Bednarski; Michael Hall; Samuel W Foster; SiJun Jin; Joshua J Davis; Wei Xue; Eric Constans; James P Grinias
Journal:  HardwareX       Date:  2021-08-10

4.  Loop-Mediated Isothermal Amplification of Trypanosoma cruzi DNA for Point-of-Care Follow-Up of Anti-Parasitic Treatment of Chagas Disease.

Authors:  Arturo A Muñoz-Calderón; Susana A Besuschio; Season Wong; Marisa Fernández; Lady J García Cáceres; Patricia Giorgio; Laura A Barcan; Cole Markham; Yanwen E Liu; Belkisyole Alarcón de Noya; Silvia A Longhi; Alejandro G Schijman
Journal:  Microorganisms       Date:  2022-04-26

5.  Parasitological, serological and molecular diagnosis of acute and chronic Chagas disease: from field to laboratory.

Authors:  Alejandro Gabriel Schijman; Julio Alonso-Padilla; Silvia Andrea Longhi; Albert Picado
Journal:  Mem Inst Oswaldo Cruz       Date:  2022-05-23       Impact factor: 2.747

Review 6.  Low-cost and open-source strategies for chemical separations.

Authors:  Joshua J Davis; Samuel W Foster; James P Grinias
Journal:  J Chromatogr A       Date:  2020-12-24       Impact factor: 4.759

Review 7.  3D Printed Bioconstructs: Regenerative Modulation for Genetic Expression.

Authors:  Pravin Shende; Riddhi Trivedi
Journal:  Stem Cell Rev Rep       Date:  2021-01-16       Impact factor: 6.692

Review 8.  Narrative review of gene modification: applications in three-dimensional (3D) bioprinting.

Authors:  Bowen Fu; Jianlin Shen; Yu Chen; Yanjiao Wu; Heshi Zhang; Huan Liu; Wenhua Huang
Journal:  Ann Transl Med       Date:  2021-10

9.  A need to raise the bar - A systematic review of temporal trends in diagnostics for Japanese encephalitis virus infection, and perspectives for future research.

Authors:  Tehmina Bharucha; Freya M Shearer; Manivanh Vongsouvath; Mayfong Mayxay; Xavier de Lamballerie; Paul N Newton; Nicole Zitzmann; Ernest Gould; Audrey Dubot-Pérès
Journal:  Int J Infect Dis       Date:  2020-03-20       Impact factor: 3.623

10.  A low-cost smart system for electrophoresis-based nucleic acids detection at the visible spectrum.

Authors:  Eduardo Nogueira Cunha; Maria Fernanda Bezerra de Souza; Daniel Carlos Ferreira Lanza; João Paulo Matos Santos Lima
Journal:  PLoS One       Date:  2020-10-15       Impact factor: 3.240

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.