Literature DB >> 23903665

Purification of DNA eluates from the ProbeTec GC Q(x) assay on BD Viper™ XTR allows for further analysis and confirmation of gonorrhea.

H S Tunsjø1, E Smedsrud, P C Holm, K Rokvam, C Schie, V Rognlien, I Augustin, A Fostervold.   

Abstract

Low positive predictive values of Neisseria gonorrhoeae nucleic acid amplification tests in low-prevalence populations are a major challenge for accurate diagnostics. It is therefore necessary to verify all positive N. gonorrhoeae results with a different assay and target gene, preferably using the same sample. The BD ProbeTec™ Q(x) Collection Kit for Endocervical or Lesion Specimens, which is recommended for BD Viper™ XTR, is incompatible with other commercial platforms. Therefore, a confirmatory PCR has not been available for samples received on this transport medium. To be able to verify results from these samples with another assay, our objective was to establish a procedure for using the DNA eluates from BD Viper™ XTR for further analysis. DNA eluates from BD Viper™ XTR were collected and analyzed in two in-house confirmatory real-time PCRs targeting the porA pseudogene and the opa multicopy gene. BD Viper™ XTR DNA eluates were analyzed directly and also after purification with the nucleic acid extraction system NucliSENS® easyMag®. Purification of BD Viper™ XTR DNA eluates with the nucleic acid extraction system NucliSENS® easyMag® provided a sensitivity of the in-house PCR comparable to BD Viper™. With the inclusion of two target genes in the confirmatory PCR, specific and reliable verification of results were obtained. This study presents a simple, inexpensive procedure which allows for rapid verification of gonorrhea from samples received on the BD ProbeTec™ Q(x) Collection Kit for Endocervical or Lesion Specimens.

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Year:  2013        PMID: 23903665     DOI: 10.1007/s10096-013-1927-4

Source DB:  PubMed          Journal:  Eur J Clin Microbiol Infect Dis        ISSN: 0934-9723            Impact factor:   3.267


  20 in total

1.  Clinical Neisseria gonorrhoeae isolate with a N. meningitidis porA gene and no prolyliminopeptidase activity, Sweden, 2011: danger of false-negative genetic and culture diagnostic results.

Authors:  D Golparian; E Johansson; M Unemo
Journal:  Euro Surveill       Date:  2012-03-01

2.  Evaluation of six commercial nucleic acid amplification tests for detection of Neisseria gonorrhoeae and other Neisseria species.

Authors:  Sepehr N Tabrizi; Magnus Unemo; Athena E Limnios; Tiffany R Hogan; Stig-Ove Hjelmevoll; Susanne M Garland; John Tapsall
Journal:  J Clin Microbiol       Date:  2011-08-03       Impact factor: 5.948

3.  2009 European (IUSTI/WHO) guideline on the diagnosis and treatment of gonorrhoea in adults.

Authors:  C Bignell
Journal:  Int J STD AIDS       Date:  2009-07       Impact factor: 1.359

4.  Evaluation of opa-based real-time PCR for detection of Neisseria gonorrhoeae.

Authors:  Sepehr N Tabrizi; Shujun Chen; John Tapsall; Suzanne M Garland
Journal:  Sex Transm Dis       Date:  2005-03       Impact factor: 2.830

5.  Specific and sensitive detection of Neisseria gonorrhoeae in clinical specimens by real-time PCR.

Authors:  C W M Geraats-Peters; M Brouwers; P M Schneeberger; A G M van der Zanden; S M Bruisten; G Weers-Pothoff; C H E Boel; A J C van den Brule; H G Harmsen; M H A Hermans
Journal:  J Clin Microbiol       Date:  2005-11       Impact factor: 5.948

6.  Evaluation of strategies for confirming Neisseria gonorrhoeae nucleic acid amplification tests.

Authors:  Sarah Alexander; Filomeno Coelho da Silva; Rohini Manuel; Rajesh Varma; Catherine Ison
Journal:  J Med Microbiol       Date:  2011-03-17       Impact factor: 2.472

7.  Evaluation of the specificities of five DNA amplification methods for the detection of Neisseria gonorrhoeae.

Authors:  H M Palmer; H Mallinson; R L Wood; A J Herring
Journal:  J Clin Microbiol       Date:  2003-02       Impact factor: 5.948

8.  A duplex Neisseria gonorrhoeae real-time polymerase chain reaction assay targeting the gonococcal porA pseudogene and multicopy opa genes.

Authors:  Namraj Goire; Michael D Nissen; Genevera M LeCornec; Theo P Sloots; David M Whiley
Journal:  Diagn Microbiol Infect Dis       Date:  2008-01-14       Impact factor: 2.803

9.  Deoxyribonucleic acid relatedness among Neisseria gonorrhoeae, N. meningitidis, N. lactamica, N. cinerea and "Neisseria polysaccharea".

Authors:  M Guibourdenche; M Y Popoff; J Y Riou
Journal:  Ann Inst Pasteur Microbiol       Date:  1986 Sep-Oct

10.  Nucleic acid amplification tests for diagnosis of Neisseria gonorrhoeae oropharyngeal infections.

Authors:  Laura H Bachmann; Robert E Johnson; Hong Cheng; Lauri E Markowitz; John R Papp; Edward W Hook
Journal:  J Clin Microbiol       Date:  2009-02-04       Impact factor: 5.948

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