Literature DB >> 23902920

Phylogenetic inferences on HIV-1 transmission: implications for the design of prevention and treatment interventions.

Bluma Brenner, Mark A Wainberg, Michel Roger.   

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Year:  2013        PMID： 23902920      PMCID： PMC3786580          DOI： 10.1097/QAD.0b013e32835cffd9

Source DB:  PubMed          Journal:  AIDS        ISSN： 0269-9370            Impact factor:   4.177


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  183 in total

1.  Endogenous or exogenous spreading of HIV-1 in Nordrhein-Westfalen, Germany, investigated by phylodynamic analysis of the RESINA Study cohort.

Authors:  Glenn Lawyer; Eugen Schülter; Rolf Kaiser; Stefan Reuter; Mark Oette; Thomas Lengauer
Journal:  Med Microbiol Immunol       Date:  2012-01-20       Impact factor: 3.402

2.  Extensive and complex HIV-1 recombination between B', C and CRF01_AE among IDUs in south-east Asia.

Authors:  Wei Pang; Chiyu Zhang; Lin Duo; Yan-Heng Zhou; Zhi-Hong Yao; Feng-Liang Liu; Hong Li; Yuan-Quan Tu; Yong-Tang Zheng
Journal:  AIDS       Date:  2012-06-01       Impact factor: 4.177

3.  Comparison of a high-resolution melting assay to next-generation sequencing for analysis of HIV diversity.

Authors:  Matthew M Cousins; San-San Ou; Maria J Wawer; Supriya Munshaw; David Swan; Craig A Magaret; Caroline E Mullis; David Serwadda; Stephen F Porcella; Ronald H Gray; Thomas C Quinn; Deborah Donnell; Susan H Eshleman; Andrew D Redd
Journal:  J Clin Microbiol       Date:  2012-07-11       Impact factor: 5.948

4.  Transmitted drug resistance and phylogenetic relationships among acute and early HIV-1-infected individuals in New York City.

Authors:  Delivette Castor; Andrea Low; Teresa Evering; Sharon Karmon; Brandi Davis; Amir Figueroa; Melissa LaMar; Donald Garmon; Saurabh Mehandru; Martin Markowitz
Journal:  J Acquir Immune Defic Syndr       Date:  2012-09-01       Impact factor: 3.731

5.  Investigation of HIV-1 transmission events by phylogenetic methods: requirement for scientific rigour.

Authors:  Stéphane Hué; Jonathan P Clewley; Patricia A Cane; Deenan Pillay
Journal:  AIDS       Date:  2005-03-04       Impact factor: 4.177

6.  Phylogeographic reconstruction of HIV type 1B in Montenegro and the Balkan region.

Authors:  Massimo Ciccozzi; Alessia Lai; Erika Ebranati; Elena Gabanelli; Massimo Galli; Boban Mugosa; Zoran Vratnica; Danijela Vujoševic; Dragan Lauševic; Marco Ciotti; Eleonora Cella; Alessandra Lo Presti; Gianguglielmo Zehender
Journal:  AIDS Res Hum Retroviruses       Date:  2012-04-03       Impact factor: 2.205

Review 7.  Using HIV viral load to guide treatment-for-prevention interventions.

Authors:  Vladimir Novitsky; Max Essex
Journal:  Curr Opin HIV AIDS       Date:  2012-03       Impact factor: 4.283

8.  Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing.

Authors:  Jesus F Salazar-Gonzalez; Elizabeth Bailes; Kimmy T Pham; Maria G Salazar; M Brad Guffey; Brandon F Keele; Cynthia A Derdeyn; Paul Farmer; Eric Hunter; Susan Allen; Olivier Manigart; Joseph Mulenga; Jeffrey A Anderson; Ronald Swanstrom; Barton F Haynes; Gayathri S Athreya; Bette T M Korber; Paul M Sharp; George M Shaw; Beatrice H Hahn
Journal:  J Virol       Date:  2008-02-06       Impact factor: 5.103

9.  HIV treatment as prevention: principles of good HIV epidemiology modelling for public health decision-making in all modes of prevention and evaluation.

Authors:  Wim Delva; David P Wilson; Laith Abu-Raddad; Marelize Gorgens; David Wilson; Timothy B Hallett; Alex Welte
Journal:  PLoS Med       Date:  2012-07-10       Impact factor: 11.069

10.  Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection.

Authors:  Guido Ferrari; Bette Korber; Nilu Goonetilleke; Michael K P Liu; Emma L Turnbull; Jesus F Salazar-Gonzalez; Natalie Hawkins; Steve Self; Sydeaka Watson; Michael R Betts; Cynthia Gay; Kara McGhee; Pierre Pellegrino; Ian Williams; Georgia D Tomaras; Barton F Haynes; Clive M Gray; Persephone Borrow; Mario Roederer; Andrew J McMichael; Kent J Weinhold
Journal:  PLoS Pathog       Date:  2011-02-10       Impact factor: 6.823
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  47 in total

1.  Impact of early-stage HIV transmission on treatment as prevention.

Authors:  Kimberly A Powers; Mirjam E Kretzschmar; William C Miller; Myron S Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

2.  Importance of Viral Sequence Length and Number of Variable and Informative Sites in Analysis of HIV Clustering.

Authors:  Vlad Novitsky; Sikhulile Moyo; Quanhong Lei; Victor DeGruttola; M Essex
Journal:  AIDS Res Hum Retroviruses       Date:  2015-02-06       Impact factor: 2.205

3.  Transmission fitness of drug-resistant HIV revealed in a surveillance system transmission network.

Authors:  Joel O Wertheim; Alexandra M Oster; Jeffrey A Johnson; William M Switzer; Neeraja Saduvala; Angela L Hernandez; H Irene Hall; Walid Heneine
Journal:  Virus Evol       Date:  2017-04-19

4.  Mapping of HIV-1C Transmission Networks Reveals Extensive Spread of Viral Lineages Across Villages in Botswana Treatment-as-Prevention Trial.

Authors:  Vlad Novitsky; Melissa Zahralban-Steele; Sikhulile Moyo; Tapiwa Nkhisang; Dorcas Maruapula; Mary Fran McLane; Jean Leidner; Kara Bennett; Kathleen E Wirth; Tendani Gaolathe; Etienne Kadima; Unoda Chakalisa; Molly Pretorius Holme; Shahin Lockman; Mompati Mmalane; Joseph Makhema; Simani Gaseitsiwe; Victor DeGruttola; M Essex
Journal:  J Infect Dis       Date:  2020-06-03       Impact factor: 5.226

5.  Impact of sampling density on the extent of HIV clustering.

Authors:  Vlad Novitsky; Sikhulile Moyo; Quanhong Lei; Victor DeGruttola; Myron Essex
Journal:  AIDS Res Hum Retroviruses       Date:  2014-12       Impact factor: 2.205

6.  Leveraging Phylogenetics to Understand HIV Transmission and Partner Notification Networks.

Authors:  Dana K Pasquale; Irene A Doherty; Lynne A Sampson; Stephane Hué; Peter A Leone; Joseph Sebastian; Sue L Ledford; Joseph J Eron; William C Miller; Ann M Dennis
Journal:  J Acquir Immune Defic Syndr       Date:  2018-08-01       Impact factor: 3.731

Review 7.  Factors Driving the HIV Epidemic in Southern Africa.

Authors:  Lyle R McKinnon; Quarraisha Abdool Karim
Journal:  Curr HIV/AIDS Rep       Date:  2016-06       Impact factor: 5.071

Review 8.  Enhanced use of phylogenetic data to inform public health approaches to HIV among men who have sex with men.

Authors:  Danielle German; Mary Kate Grabowski; Chris Beyrer
Journal:  Sex Health       Date:  2017-02       Impact factor: 2.706

9.  Phylodynamic analysis of HIV sub-epidemics in Mochudi, Botswana.

Authors:  Vlad Novitsky; Denise Kühnert; Sikhulile Moyo; Erik Widenfelt; Lillian Okui; M Essex
Journal:  Epidemics       Date:  2015-08-28       Impact factor: 4.396

10.  Phylogenetic Investigation of a Statewide HIV-1 Epidemic Reveals Ongoing and Active Transmission Networks Among Men Who Have Sex With Men.

Authors:  Philip A Chan; Joseph W Hogan; Austin Huang; Allison DeLong; Marco Salemi; Kenneth H Mayer; Rami Kantor
Journal:  J Acquir Immune Defic Syndr       Date:  2015-12-01       Impact factor: 3.731
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