Literature DB >> 23896349

Towards a detailed atlas of protein-protein interactions.

Roberto Mosca1, Tirso Pons, Arnaud Céol, Alfonso Valencia, Patrick Aloy.   

Abstract

Protein interaction maps are the key to understand the complex world of biological processes inside the cell. Public protein databases have already catalogued hundreds of thousands of experimentally discovered interactions, and struggle to curate all the existing information dispersed through the literature. However, to be most efficient, standard protocols need to be implemented for direct submission of new interaction sets directly into databases. At the same time, great efforts are invested to expand the coverage of the interaction space and unveil the molecular details of such interactions up to the atomistic level. The net result will be the definition of a detailed atlas spanning the universe of protein interactions to guide the everyday work of the biologist.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23896349     DOI: 10.1016/j.sbi.2013.07.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  49 in total

1.  Are protein-protein interfaces special regions on a protein's surface?

Authors:  Sam Tonddast-Navaei; Jeffrey Skolnick
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

Review 2.  Protein-protein docking: from interaction to interactome.

Authors:  Ilya A Vakser
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

Review 3.  Network Medicine in Pathobiology.

Authors:  Laurel Yong-Hwa Lee; Joseph Loscalzo
Journal:  Am J Pathol       Date:  2019-04-20       Impact factor: 4.307

4.  Piconewton-Scale Analysis of Ras-BRaf Signal Transduction with Single-Molecule Force Spectroscopy.

Authors:  Chae-Seok Lim; Cheng Wen; Yanghui Sheng; Guangfu Wang; Zhuan Zhou; Shiqiang Wang; Huaye Zhang; Anpei Ye; J Julius Zhu
Journal:  Small       Date:  2017-08-15       Impact factor: 13.281

5.  Modeling complexes of modeled proteins.

Authors:  Ivan Anishchenko; Petras J Kundrotas; Ilya A Vakser
Journal:  Proteins       Date:  2016-10-24

6.  Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features.

Authors:  Ziyun Ding; Daisuke Kihara
Journal:  Curr Protoc Protein Sci       Date:  2018-06-21

7.  Predicting perturbation patterns from the topology of biological networks.

Authors:  Marc Santolini; Albert-László Barabási
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-20       Impact factor: 11.205

8.  Integrated querying and version control of context-specific biological networks.

Authors:  Tyler Cowman; Mustafa Coşkun; Ananth Grama; Mehmet Koyutürk
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

Review 9.  Exploring mechanisms of human disease through structurally resolved protein interactome networks.

Authors:  Robert Fragoza; Hao Ran Lee; Nicolas A Cordero; Jishnu Das; Yu Guo; Michael J Meyer; Tommy V Vo; Xiujuan Wang; Haiyuan Yu
Journal:  Mol Biosyst       Date:  2014-01

10.  Pushing the Backbone in Protein-Protein Docking.

Authors:  Daisuke Kuroda; Jeffrey J Gray
Journal:  Structure       Date:  2016-08-25       Impact factor: 5.006

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