Literature DB >> 23893718

Bending the rules: widefield microscopy and the Abbe limit of resolution.

Jolien S Verdaasdonk1, Andrew D Stephens, Julian Haase, Kerry Bloom.   

Abstract

One of the most fundamental concepts of microscopy is that of resolution-the ability to clearly distinguish two objects as separate. Recent advances such as structured illumination microscopy (SIM) and point localization techniques including photoactivated localization microscopy (PALM), and stochastic optical reconstruction microscopy (STORM) strive to overcome the inherent limits of resolution of the modern light microscope. These techniques, however, are not always feasible or optimal for live cell imaging. Thus, in this review, we explore three techniques for extracting high resolution data from images acquired on a widefield microscope-deconvolution, model convolution, and Gaussian fitting. Deconvolution is a powerful tool for restoring a blurred image using knowledge of the point spread function (PSF) describing the blurring of light by the microscope, although care must be taken to ensure accuracy of subsequent quantitative analysis. The process of model convolution also requires knowledge of the PSF to blur a simulated image which can then be compared to the experimentally acquired data to reach conclusions regarding its geometry and fluorophore distribution. Gaussian fitting is the basis for point localization microscopy, and can also be applied to tracking spot motion over time or measuring spot shape and size. All together, these three methods serve as powerful tools for high-resolution imaging using widefield microscopy.
© 2013 Wiley Periodicals, Inc.

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Year:  2014        PMID: 23893718      PMCID: PMC4076117          DOI: 10.1002/jcp.24439

Source DB:  PubMed          Journal:  J Cell Physiol        ISSN: 0021-9541            Impact factor:   6.384


  52 in total

1.  Quantitative comparison of algorithms for tracking single fluorescent particles.

Authors:  M K Cheezum; W F Walker; W H Guilford
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

2.  Mechanisms of microtubule-based kinetochore positioning in the yeast metaphase spindle.

Authors:  Brian L Sprague; Chad G Pearson; Paul S Maddox; Kerry S Bloom; E D Salmon; David J Odde
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

3.  The influence of movement on the localization precision of sub-resolution particles in fluorescence microscopy.

Authors:  Hendrik Deschout; Kristiaan Neyts; Kevin Braeckmans
Journal:  J Biophotonics       Date:  2011-11-15       Impact factor: 3.207

4.  FluoroSim: A Visual Problem-Solving Environment for Fluorescence Microscopy.

Authors:  Cory W Quammen; Alvin C Richardson; Julian Haase; Benjamin D Harrison; Russell M Taylor; Kerry S Bloom
Journal:  Eurographics Workshop Vis Comput Biomed       Date:  2008-01-01

5.  Blind deconvolution of quantum-limited incoherent imagery: maximum-likelihood approach.

Authors:  T J Holmes
Journal:  J Opt Soc Am A       Date:  1992-07       Impact factor: 2.129

6.  The budding yeast point centromere associates with two Cse4 molecules during mitosis.

Authors:  Pavithra Aravamudhan; Isabella Felzer-Kim; Ajit P Joglekar
Journal:  Curr Biol       Date:  2013-04-25       Impact factor: 10.834

7.  Uncovering chromatin's contribution to the mitotic spindle: Applications of computational and polymer models.

Authors:  Matthew E Larson; Benjamin D Harrison; Kerry Bloom
Journal:  Biochimie       Date:  2010-06-25       Impact factor: 4.079

8.  Simultaneous multiple-emitter fitting for single molecule super-resolution imaging.

Authors:  Fang Huang; Samantha L Schwartz; Jason M Byars; Keith A Lidke
Journal:  Biomed Opt Express       Date:  2011-04-29       Impact factor: 3.732

9.  Point centromeres contain more than a single centromere-specific Cse4 (CENP-A) nucleosome.

Authors:  Josh Lawrimore; Kerry S Bloom; E D Salmon
Journal:  J Cell Biol       Date:  2011-11-14       Impact factor: 10.539

10.  Robust single-particle tracking in live-cell time-lapse sequences.

Authors:  Khuloud Jaqaman; Dinah Loerke; Marcel Mettlen; Hirotaka Kuwata; Sergio Grinstein; Sandra L Schmid; Gaudenz Danuser
Journal:  Nat Methods       Date:  2008-07-20       Impact factor: 28.547

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  12 in total

1.  Dynamics and organization of cortical microtubules as revealed by superresolution structured illumination microscopy.

Authors:  George Komis; Martin Mistrik; Olga Samajová; Anna Doskočilová; Miroslav Ovečka; Peter Illés; Jiri Bartek; Jozef Samaj
Journal:  Plant Physiol       Date:  2014-03-31       Impact factor: 8.340

2.  Superresolution live imaging of plant cells using structured illumination microscopy.

Authors:  George Komis; Martin Mistrik; Olga Šamajová; Miroslav Ovečka; Jiri Bartek; Jozef Šamaj
Journal:  Nat Protoc       Date:  2015-07-23       Impact factor: 13.491

3.  Methods for imaging mammalian mitochondrial morphology: A prospective on MitoGraph.

Authors:  Megan C Harwig; Matheus P Viana; John M Egner; Jason J Harwig; Michael E Widlansky; Susanne M Rafelski; R Blake Hill
Journal:  Anal Biochem       Date:  2018-03-02       Impact factor: 3.365

Review 4.  What Is Motion? Recent Advances in the Study of Molecular Movement Patterns of the Peptidoglycan Synthesis Machines.

Authors:  Melissa Mae Lamanna; Anthony T Maurelli
Journal:  J Bacteriol       Date:  2021-12-20       Impact factor: 3.476

Review 5.  From Microscopy to Nanoscopy: Defining an Arabidopsis thaliana Meiotic Atlas at the Nanometer Scale.

Authors:  Jason Sims; Peter Schlögelhofer; Marie-Therese Kurzbauer
Journal:  Front Plant Sci       Date:  2021-05-18       Impact factor: 5.753

6.  The construction of high-magnification homemade lenses for a simple microscope: an easy "DIY" tool for biological and interdisciplinary education.

Authors:  Daniela P Flores; Timothy C Marzullo
Journal:  Adv Physiol Educ       Date:  2021-03-01       Impact factor: 2.396

7.  Visualization of the 3D structures of small organisms via LED-SIM.

Authors:  Yongying Ruan; Dan Dan; Mengna Zhang; Ming Bai; Ming Lei; Baoli Yao; Xingke Yang
Journal:  Front Zool       Date:  2016-06-14       Impact factor: 3.172

Review 8.  Navigating challenges in the application of superresolution microscopy.

Authors:  Talley J Lambert; Jennifer C Waters
Journal:  J Cell Biol       Date:  2016-12-05       Impact factor: 10.539

Review 9.  The frontier of live tissue imaging across space and time.

Authors:  Qiang Huang; Aliesha Garrett; Shree Bose; Stephanie Blocker; Anne C Rios; Hans Clevers; Xiling Shen
Journal:  Cell Stem Cell       Date:  2021-04-01       Impact factor: 24.633

10.  Geometric partitioning of cohesin and condensin is a consequence of chromatin loops.

Authors:  Josh Lawrimore; Ayush Doshi; Brandon Friedman; Elaine Yeh; Kerry Bloom
Journal:  Mol Biol Cell       Date:  2018-09-12       Impact factor: 4.138

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