Literature DB >> 23892057

Characterization and allelic variation of the transporters associated with antigen processing (TAP) genes in the domestic dog (Canis lupus familiaris).

Gregory S Gojanovich1, Peter Ross, Savannah G Holmer, Jennifer C Holmes, Paul R Hess.   

Abstract

The function of the transporters associated with antigen processing (TAP) complex is to shuttle antigenic peptides from the cytosol to the endoplasmic reticulum to load MHC class I molecules for CD8(+) T-cell immunosurveillance. Here we report the promoter and coding regions of the canine TAP1 and TAP2 genes, which encode the homologous subunits forming the TAP heterodimer. By sampling genetically divergent breeds, polymorphisms in both genes were identified, although there were few amino acid differences between alleles. Splice variants were also found. When aligned to TAP genes of other species, functional regions appeared conserved, and upon phylogenetic analysis, canine sequences segregated appropriately with their orthologs. Transfer of the canine TAP2 gene into a murine TAP2-defective cell line rescued surface MHC class I expression, confirming exporter function. This data should prove useful in investigating the association of specific TAP defects or alleles with immunity to intracellular pathogens and cancer in dogs.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  ABC; ATP-binding cassette; Ab; Alleles; CDS; CL; Canine; DLA; EST; GAS; GFP; HLA; IFN; IFN-stimulated response element; IFR; ISRE; Immunology; MED1; NBD; ORF; PBMC; PKR; RLM-RACE; RNA ligase-mediated rapid amplification of cDNA ends; SNP; STAT; SV; Splice variants; TAP; TMD; TSS; Transporter associated with antigen processing; UTR; antibody; code determining sequence; cytosolic loop; dog leukocyte antigen; expressed sequence tag; gamma activating sequence; green fluorescent protein; human leukocyte antigen; interferon; interferon regulatory factor; multiple start site element downstream1; nucleotide-binding domain; open reading frame; peripheral blood mononuclear cells; protein kinase R; signal transducers and activators of transcription; single nucleotide polymorphism; splice variant; transcription start site; transmembrane domain; transporter associated with antigen processing; untranslated region; β2-microglobulin; β2M

Mesh:

Substances:

Year:  2013        PMID: 23892057      PMCID: PMC3846772          DOI: 10.1016/j.dci.2013.07.011

Source DB:  PubMed          Journal:  Dev Comp Immunol        ISSN: 0145-305X            Impact factor:   3.636


  55 in total

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Journal:  J Immunol       Date:  1999-10-15       Impact factor: 5.422

2.  Polymorphism of LMP2, TAP1, LMP7 and TAP2 in Brazilian Amerindians and Caucasoids: implications for the evolution of allelic and haplotypic diversity.

Authors:  F R Faucz; C M Probst; M L Petzl-Erler
Journal:  Eur J Immunogenet       Date:  2000-02

3.  Organization and functional analysis of the mouse transporter associated with antigen processing 2 promoter.

Authors:  E Arons; V Kunin; C Schechter; R Ehrlich
Journal:  J Immunol       Date:  2001-03-15       Impact factor: 5.422

Review 4.  The transporter associated with antigen processing (TAP): structural integrity, expression, function, and its clinical relevance.

Authors:  U Ritz; B Seliger
Journal:  Mol Med       Date:  2001-03       Impact factor: 6.354

5.  A catalogue of splice junction sequences.

Authors:  S M Mount
Journal:  Nucleic Acids Res       Date:  1982-01-22       Impact factor: 16.971

6.  A macrophage-monocyte cell line from a dog with malignant histiocytosis.

Authors:  M L Wellman; S Krakowka; R M Jacobs; G J Kociba
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7.  RNA-dependent protein kinase PKR is required for activation of NF-kappa B by IFN-gamma in a STAT1-independent pathway.

Authors:  A Deb; S J Haque; T Mogensen; R H Silverman; B R Williams
Journal:  J Immunol       Date:  2001-05-15       Impact factor: 5.422

8.  Polymorphisms of the TAP1 and TAP2 genes in human alveolar echinococcosis.

Authors:  S Zhang; A Penfornis; S Harraga; J Chabod; I Beurton; S Bresson-Hadni; P Tiberghien; P Kern; D-A Vuitton
Journal:  Eur J Immunogenet       Date:  2003-04

9.  Genetic structure of the purebred domestic dog.

Authors:  Heidi G Parker; Lisa V Kim; Nathan B Sutter; Scott Carlson; Travis D Lorentzen; Tiffany B Malek; Gary S Johnson; Hawkins B DeFrance; Elaine A Ostrander; Leonid Kruglyak
Journal:  Science       Date:  2004-05-21       Impact factor: 47.728

10.  Host resistance directed selectively against H-2-deficient lymphoma variants. Analysis of the mechanism.

Authors:  H G Ljunggren; K Kärre
Journal:  J Exp Med       Date:  1985-12-01       Impact factor: 14.307

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  1 in total

1.  Assembly and function of the major histocompatibility complex (MHC) I peptide-loading complex are conserved across higher vertebrates.

Authors:  Andreas Hinz; Johanna Jedamzick; Valentina Herbring; Hanna Fischbach; Jessica Hartmann; David Parcej; Joachim Koch; Robert Tampé
Journal:  J Biol Chem       Date:  2014-10-15       Impact factor: 5.157

  1 in total

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