Literature DB >> 23891475

Current development in isoprenoid precursor biosynthesis and regulation.

Wei-chen Chang1, Heng Song, Hung-wen Liu, Pinghua Liu.   

Abstract

Isoprenoids are one of the largest classes of natural products and all of them are constructed from two precursors, isopentenyl diphosphate (IPP) and its isomer dimethylallyl diphosphate (DMAPP). For decades, the mevalonic acid (MVA) pathway was proposed to be the only IPP and DMAPP biosynthetic pathway. This review summarizes the newly discovered IPP and DMAPP production pathways since late 1990s, their distribution among different kingdoms, and their roles in secondary metabolite production. These new IPP and DMAPP production pathways include the methylerythritol phosphate (MEP) pathway, a modified MVA pathway, and the 5-methylthioadenosine shunt pathway. Relative to the studies on the MVA pathway, information on the MEP pathway regulation is limited and the mechanistic details of several of its novel transformations remain to be addressed. Current status on both MEP pathway regulation and mechanistic issues is also presented.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23891475      PMCID: PMC4068245          DOI: 10.1016/j.cbpa.2013.06.020

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  44 in total

1.  Isoprenoid biosynthesis through the methylerythritol phosphate pathway: the (E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase (GcpE) is a [4Fe-4S] protein.

Authors:  Myriam Seemann; Bernadette Tse Sum Bui; Murielle Wolff; Denis Tritsch; Narciso Campos; Albert Boronat; Andrée Marquet; Michel Rohmer
Journal:  Angew Chem Int Ed Engl       Date:  2002-11-15       Impact factor: 15.336

2.  Functional characterization of GcpE, an essential enzyme of the non-mevalonate pathway of isoprenoid biosynthesis.

Authors:  Ann-Kristin Kollas; Evert C Duin; Matthias Eberl; Boran Altincicek; Martin Hintz; Armin Reichenberg; Dajana Henschker; Anke Henne; Irina Steinbrecher; Dmitry N Ostrovsky; Reiner Hedderich; Ewald Beck; Hassan Jomaa; Jochen Wiesner
Journal:  FEBS Lett       Date:  2002-12-18       Impact factor: 4.124

3.  Identification of the Escherichia coli lytB gene, which is involved in penicillin tolerance and control of the stringent response.

Authors:  C E Gustafson; S Kaul; E E Ishiguro
Journal:  J Bacteriol       Date:  1993-02       Impact factor: 3.490

4.  Structure of 2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase from Shewanella oneidensis at 1.6 A: identification of farnesyl pyrophosphate trapped in a hydrophobic cavity.

Authors:  Shuisong Ni; Howard Robinson; Gregory C Marsing; Dirksen E Bussiere; Michael A Kennedy
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-10-20

Review 5.  Diversity of the biosynthesis of the isoprene units.

Authors:  Tomohisa Kuzuyama; Haruo Seto
Journal:  Nat Prod Rep       Date:  2003-04       Impact factor: 13.423

6.  The deoxyxylulose phosphate pathway of isoprenoid biosynthesis: studies on the mechanisms of the reactions catalyzed by IspG and IspH protein.

Authors:  Felix Rohdich; Ferdinand Zepeck; Petra Adam; Stefan Hecht; Johannes Kaiser; Ralf Laupitz; Tobias Gräwert; Sabine Amslinger; Wolfgang Eisenreich; Adelbert Bacher; Duilio Arigoni
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-05       Impact factor: 11.205

Review 7.  Biosynthesis of isoprenoids via the non-mevalonate pathway.

Authors:  W Eisenreich; A Bacher; D Arigoni; F Rohdich
Journal:  Cell Mol Life Sci       Date:  2004-06       Impact factor: 9.261

8.  Biosynthesis of isoprenoids: a bifunctional IspDF enzyme from Campylobacter jejuni.

Authors:  Mads Gabrielsen; Felix Rohdich; Wolfgang Eisenreich; Tobias Gräwert; Stefan Hecht; Adelbert Bacher; William N Hunter
Journal:  Eur J Biochem       Date:  2004-07

9.  Chlamydial histone-DNA interactions are disrupted by a metabolite in the methylerythritol phosphate pathway of isoprenoid biosynthesis.

Authors:  Nicole A Grieshaber; Elizabeth R Fischer; David J Mead; Cheryl A Dooley; Ted Hackstadt
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

Review 10.  Multivalent feedback regulation of HMG CoA reductase, a control mechanism coordinating isoprenoid synthesis and cell growth.

Authors:  M S Brown; J L Goldstein
Journal:  J Lipid Res       Date:  1980-07       Impact factor: 5.922

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  31 in total

1.  A fat story-antigen presentation by butyrophilin 3A1 to γδ T cells.

Authors:  Charlotte Esser
Journal:  Cell Mol Immunol       Date:  2013-10-07       Impact factor: 11.530

2.  Uncovering the functional residues of Arabidopsis isoprenoid biosynthesis enzyme HDS.

Authors:  Jin-Zheng Wang; Yongxing Lei; Yanmei Xiao; Xiang He; Jiubo Liang; Jishan Jiang; Shangzhi Dong; Haiyan Ke; Patricia Leon; Philipp Zerbe; Youli Xiao; Katayoon Dehesh
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-26       Impact factor: 11.205

3.  Chemical Proteomic Profiling of the Interacting Proteins of Isoprenoid Pyrophosphates.

Authors:  Rong Cai; Xuejiao Dong; Kailin Yu; Xiaomei He; Xiaochuan Liu; Yinsheng Wang
Journal:  Anal Chem       Date:  2020-05-27       Impact factor: 6.986

4.  Two-step pathway for isoprenoid synthesis.

Authors:  Alkiviadis Orfefs Chatzivasileiou; Valerie Ward; Steven McBride Edgar; Gregory Stephanopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-24       Impact factor: 11.205

Review 5.  The type II isopentenyl Diphosphate:Dimethylallyl diphosphate isomerase (IDI-2): A model for acid/base chemistry in flavoenzyme catalysis.

Authors:  Christopher J Thibodeaux; Hung-Wen Liu
Journal:  Arch Biochem Biophys       Date:  2017-05-31       Impact factor: 4.013

6.  Mevalonate-derived quinonemethide triterpenoid from in vitro roots of Peritassa laevigata and their localization in root tissue by MALDI imaging.

Authors:  Edieidia S Pina; Denise B Silva; Simone P Teixeira; Juliana S Coppede; Maysa Furlan; Suzelei C França; Norberto P Lopes; Ana Maria S Pereira; Adriana A Lopes
Journal:  Sci Rep       Date:  2016-03-04       Impact factor: 4.379

7.  Synthesis and biological evaluation of pyrazolopyrimidines as potential antibacterial agents.

Authors:  Gashaw M Goshu; Debarati Ghose; Joy M Bain; Phillip G Pierce; Darren W Begley; Stephen N Hewitt; Hannah S Udell; Peter J Myler; R Meganathan; Timothy J Hagen
Journal:  Bioorg Med Chem Lett       Date:  2015-12-15       Impact factor: 2.823

8.  A single nucleotide mutation of IspF gene involved in the MEP pathway for isoprenoid biosynthesis causes yellow-green leaf phenotype in rice.

Authors:  Rui Huang; Yang Wang; Pingrong Wang; Chunmei Li; Fuliang Xiao; Nenggang Chen; Na Li; Caixia Li; Changhui Sun; Lihua Li; Rongjun Chen; Zhengjun Xu; Jianqing Zhu; Xiaojian Deng
Journal:  Plant Mol Biol       Date:  2017-11-15       Impact factor: 4.076

Review 9.  Isoprenyl diphosphate synthases: the chain length determining step in terpene biosynthesis.

Authors:  Raimund Nagel; Axel Schmidt; Reuben J Peters
Journal:  Planta       Date:  2018-11-22       Impact factor: 4.116

10.  Comprehensive transcriptome analysis provides insights into metabolic and gene regulatory networks in trichomes of Nicotiana tabacum.

Authors:  Abhishek Kumar Nautiyal; Umar Gani; Priyanka Sharma; Maridul Kundan; Mohd Fayaz; Surrinder K Lattoo; Prashant Misra
Journal:  Plant Mol Biol       Date:  2020-01-21       Impact factor: 4.076

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