Literature DB >> 12571359

The deoxyxylulose phosphate pathway of isoprenoid biosynthesis: studies on the mechanisms of the reactions catalyzed by IspG and IspH protein.

Felix Rohdich1, Ferdinand Zepeck, Petra Adam, Stefan Hecht, Johannes Kaiser, Ralf Laupitz, Tobias Gräwert, Sabine Amslinger, Wolfgang Eisenreich, Adelbert Bacher, Duilio Arigoni.   

Abstract

Earlier in vivo studies have shown that the sequential action of the IspG and IspH proteins is essential for the reductive transformation of 2C-methyl-d-erythritol 2,4-cyclodiphosphate into dimethylallyl diphosphate and isopentenyl diphosphate via 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. A recombinant fusion protein comprising maltose binding protein and IspG protein domains was purified from a recombinant Escherichia coli strain. The purified protein failed to transform 2C-methyl-d-erythritol 2,4-cyclodiphosphate into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate, but catalytic activity could be restored by the addition of crude cell extract from an ispG-deficient E. coli mutant. This indicates that auxiliary proteins are required, probably as shuttles for redox equivalents. On activation by photoreduced 10-methyl-5-deaza-isoalloxazine, the recombinant protein catalyzed the formation of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate from 2C-methyl-d-erythritol 2,4-cyclodiphosphate at a rate of 1 nmol x min(-1) x mg(-1). Similarly, activation by photoreduced 10-methyl-5-deaza-isoalloxazine enabled purified IspH protein to catalyze the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into a 6:1 mixture of isopentenyl diphosphate and dimethylallyl diphosphate at a rate of 0.4 micromol x min(-1) x mg(-1). IspH protein could also be activated by a mixture of flavodoxin, flavodoxin reductase, and NADPH at a rate of 3 nmol x min(-1) x mg(-1). The striking similarities of IspG and IspH protein are discussed, and plausible mechanistic schemes are proposed for the two reactions.

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Year:  2003        PMID: 12571359      PMCID: PMC149876          DOI: 10.1073/pnas.0337742100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  New method for generating deletions and gene replacements in Escherichia coli.

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Review 2.  Mechanism of action and biological profile of HMG CoA reductase inhibitors. A new therapeutic alternative.

Authors:  E E Slater; J S MacDonald
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3.  [2Fe-2S] to [4Fe-4S] cluster conversion in Escherichia coli biotin synthase.

Authors:  E C Duin; M E Lafferty; B R Crouse; R M Allen; I Sanyal; D H Flint; M K Johnson
Journal:  Biochemistry       Date:  1997-09-30       Impact factor: 3.162

4.  Cloning and characterization of a gene from Escherichia coli encoding a transketolase-like enzyme that catalyzes the synthesis of D-1-deoxyxylulose 5-phosphate, a common precursor for isoprenoid, thiamin, and pyridoxol biosynthesis.

Authors:  L M Lois; N Campos; S R Putra; K Danielsen; M Rohmer; A Boronat
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

5.  Identification of a thiamin-dependent synthase in Escherichia coli required for the formation of the 1-deoxy-D-xylulose 5-phosphate precursor to isoprenoids, thiamin, and pyridoxol.

Authors:  G A Sprenger; U Schörken; T Wiegert; S Grolle; A A de Graaf; S V Taylor; T P Begley; S Bringer-Meyer; H Sahm
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-25       Impact factor: 11.205

6.  Flavodoxin is required for the activation of the anaerobic ribonucleotide reductase.

Authors:  V Bianchi; R Eliasson; M Fontecave; E Mulliez; D M Hoover; R G Matthews; P Reichard
Journal:  Biochem Biophys Res Commun       Date:  1993-12-15       Impact factor: 3.575

7.  Reconstitution and characterization of the polynuclear iron-sulfur cluster in pyruvate formate-lyase-activating enzyme. Molecular properties of the holoenzyme form.

Authors:  R Külzer; T Pils; R Kappl; J Hüttermann; J Knappe
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8.  Procedures for the isolation and quantification of the intermediates of the mevalonic acid pathway.

Authors:  D McCaskill; R Croteau
Journal:  Anal Biochem       Date:  1993-11-15       Impact factor: 3.365

9.  Highly purified biotin synthase can transform dethiobiotin into biotin in the absence of any other protein, in the presence of photoreduced deazaflavin.

Authors:  A Méjean; B T Bui; D Florentin; O Ploux; Y Izumi; A Marquet
Journal:  Biochem Biophys Res Commun       Date:  1995-12-26       Impact factor: 3.575

Review 10.  Some new aspects of isoprenoid biosynthesis in plants--a review.

Authors:  T J Bach
Journal:  Lipids       Date:  1995-03       Impact factor: 1.880

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  76 in total

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Authors:  Weixue Wang; Jikun Li; Ke Wang; Cancan Huang; Yong Zhang; Eric Oldfield
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

2.  Terpene Specialized Metabolism in Arabidopsis thaliana.

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3.  A closer look at the spectroscopic properties of possible reaction intermediates in wild-type and mutant (E)-4-hydroxy-3-methylbut-2-enyl diphosphate reductase.

Authors:  Weiya Xu; Nicholas S Lees; Dominique Hall; Dhanushi Welideniya; Brian M Hoffman; Evert C Duin
Journal:  Biochemistry       Date:  2012-06-07       Impact factor: 3.162

4.  A whole-cell phenotypic screening platform for identifying methylerythritol phosphate pathway-selective inhibitors as novel antibacterial agents.

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Journal:  Antimicrob Agents Chemother       Date:  2012-07-09       Impact factor: 5.191

5.  Bioorganometallic mechanism of action, and inhibition, of IspH.

Authors:  Weixue Wang; Ke Wang; Yi-Liang Liu; Joo-Hwan No; Jikun Li; Mark J Nilges; Eric Oldfield
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-19       Impact factor: 11.205

Review 6.  Targeting the formation of the cell wall core of M. tuberculosis.

Authors:  Clifton E Barry; Dean C Crick; Michael R McNeil
Journal:  Infect Disord Drug Targets       Date:  2007-06

7.  Structure, function and inhibition of the two- and three-domain 4Fe-4S IspG proteins.

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8.  Genetics of Capsular Polysaccharides and Cell Envelope (Glyco)lipids.

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9.  Probing the reaction mechanism of IspH protein by x-ray structure analysis.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-28       Impact factor: 11.205

10.  Biosynthesis of camptothecin. In silico and in vivo tracer study from [1-13C]glucose.

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Journal:  Plant Physiol       Date:  2003-12-04       Impact factor: 8.340

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