Literature DB >> 23885342

Nanomechanics of collagen microfibrils.

Simone Vesentini1, Alberto Redaelli, Alfonso Gautieri.   

Abstract

Collagen constitutes one third of the human proteome, providing mechanical stability, elasticity and strength to organisms and is thus the prime construction material in biology. Collagen is also the dominating material in the extracellular matrix where its stiffness controls cell differentiation, growth and pathology. We use atomistic-based hierarchical multiscale modeling to describe this complex biological material from the bottom up. This includes the use and development of large-scale computational modeling tools to investigate several aspects related to collagen-based tissues, including source of visco-elasticity and deformation mechanisms at the nanoscale level. The key innovation of this research is that until now, collagen materials have primarily been described at macroscopic scales, without explicitly understanding the mechanical contributions at the molecular and fibrillar levels. The major impact of this research will be the development of fundamental models of collagenous tissues, important to the design of new scaffolding biomaterials for regenerative medicine as well as for the understanding of collagen-related diseases.

Entities:  

Keywords:  atomistic simulations; biomechanics; collagen; fibril; nanomechanics

Year:  2013        PMID: 23885342      PMCID: PMC3676161          DOI: 10.11138/mltj/2013.3.1.023

Source DB:  PubMed          Journal:  Muscles Ligaments Tendons J        ISSN: 2240-4554


  75 in total

1.  Direct quantification of the flexibility of type I collagen monomer.

Authors:  Yu-Long Sun; Zong-Ping Luo; Andrzej Fertala; Kai-Nan An
Journal:  Biochem Biophys Res Commun       Date:  2002-07-12       Impact factor: 3.575

2.  Development of hydrophobicity parameters to analyze proteins which bear post- or cotranslational modifications.

Authors:  S D Black; D R Mould
Journal:  Anal Biochem       Date:  1991-02-15       Impact factor: 3.365

3.  Microfibrillar structure of type I collagen in situ.

Authors:  Joseph P R O Orgel; Thomas C Irving; Andrew Miller; Tim J Wess
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-02       Impact factor: 11.205

4.  Elastic properties, Young's modulus determination and structural stability of the tropocollagen molecule: a computational study by steered molecular dynamics.

Authors:  Alicia Claudia Lorenzo; Ernesto Raúl Caffarena
Journal:  J Biomech       Date:  2005-07       Impact factor: 2.712

Review 5.  Multiscale modeling of biomolecular systems: in serial and in parallel.

Authors:  Gary S Ayton; Will G Noid; Gregory A Voth
Journal:  Curr Opin Struct Biol       Date:  2007-03-23       Impact factor: 6.809

6.  Stress-strain experiments on individual collagen fibrils.

Authors:  Zhilei L Shen; Mohammad Reza Dodge; Harold Kahn; Roberto Ballarini; Steven J Eppell
Journal:  Biophys J       Date:  2008-07-18       Impact factor: 4.033

Review 7.  Fibrillar structure and mechanical properties of collagen.

Authors:  P Fratzl; K Misof; I Zizak; G Rapp; H Amenitsch; S Bernstorff
Journal:  J Struct Biol       Date:  1998       Impact factor: 2.867

8.  How to predict diffusion of medium-sized molecules in polymer matrices. From atomistic to coarse grain simulations.

Authors:  Alfonso Gautieri; Simone Vesentini; Alberto Redaelli
Journal:  J Mol Model       Date:  2010-03-12       Impact factor: 1.810

9.  Phonons and the elastic moduli of collagen and muscle.

Authors:  R Harley; D James; A Miller; J W White
Journal:  Nature       Date:  1977-05-19       Impact factor: 49.962

10.  Possible role of decorin glycosaminoglycans in fibril to fibril force transfer in relative mature tendons--a computational study from molecular to microstructural level.

Authors:  A Redaelli; S Vesentini; M Soncini; P Vena; S Mantero; F M Montevecchi
Journal:  J Biomech       Date:  2003-10       Impact factor: 2.712

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  11 in total

1.  Tendon cell ciliary length as a biomarker of in situ cytoskeletal tensional homeostasis.

Authors:  Michael Lavagnino; Keri Gardner; Aleksa Michele Sedlak; Steven Paul Arnoczky
Journal:  Muscles Ligaments Tendons J       Date:  2013-08-11

2.  Thyroid hormones increase collagen I and cartilage oligomeric matrix protein (COMP) expression in vitro human tenocytes.

Authors:  Anna C Berardi; Francesco Oliva; Martina Berardocco; Marina la Rovere; Patrizia Accorsi; Nicola Maffulli
Journal:  Muscles Ligaments Tendons J       Date:  2014-11-17

Review 3.  The role of collagen crosslinks in ageing and diabetes - the good, the bad, and the ugly.

Authors:  Jess G Snedeker; Alfonso Gautieri
Journal:  Muscles Ligaments Tendons J       Date:  2014-11-17

4.  Quantitative assessment of the supraspinatus tendon on MRI using T2/T2* mapping and shear-wave ultrasound elastography: a pilot study.

Authors:  Konstantin Krepkin; Mary Bruno; José G Raya; Ronald S Adler; Soterios Gyftopoulos
Journal:  Skeletal Radiol       Date:  2016-11-28       Impact factor: 2.199

5.  Environmentally Controlled Curvature of Single Collagen Proteins.

Authors:  Nagmeh Rezaei; Aaron Lyons; Nancy R Forde
Journal:  Biophys J       Date:  2018-09-13       Impact factor: 4.033

Review 6.  Podosomes in space: macrophage migration and matrix degradation in 2D and 3D settings.

Authors:  Christiane Wiesner; Véronique Le-Cabec; Karim El Azzouzi; Isabelle Maridonneau-Parini; Stefan Linder
Journal:  Cell Adh Migr       Date:  2014       Impact factor: 3.405

7.  Persistence length of collagen molecules based on nonlocal viscoelastic model.

Authors:  Esmaeal Ghavanloo
Journal:  J Biol Phys       Date:  2017-09-06       Impact factor: 1.365

Review 8.  How obesity modifies tendons (implications for athletic activities).

Authors:  Michele Abate
Journal:  Muscles Ligaments Tendons J       Date:  2014-11-17

9.  Investigation of mechanisms of viscoelastic behavior of collagen molecule.

Authors:  Hossein Ghodsi; Kurosh Darvish
Journal:  J Mech Behav Biomed Mater       Date:  2015-07-26

10.  Characterization of the viscoelastic behavior of a simplified collagen micro-fibril based on molecular dynamics simulations.

Authors:  Hossein Ghodsi; Kurosh Darvish
Journal:  J Mech Behav Biomed Mater       Date:  2016-06-11
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